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公开(公告)号:US20210230681A1
公开(公告)日:2021-07-29
申请号:US17155764
申请日:2021-01-22
Applicant: 10x Genomics, Inc.
Inventor: David Michael Patterson , Sultan Doganay Tuncer , Zachary Bent
IPC: C12Q1/6837 , C12N9/12 , C12N9/00
Abstract: The present disclosure provides methods and compositions for detecting and spatially locating analyte interactions and gene expression in a biological sample. For example, provided herein are methods of determining a location of at least one analyte in a biological sample using analyte-binding moieties, proximity ligation, and an array including capture probes.
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公开(公告)号:US20240043908A1
公开(公告)日:2024-02-08
申请号:US18492362
申请日:2023-10-23
Applicant: 10x Genomics, Inc.
Inventor: Jennifer Chew , David Michael Patterson
IPC: C12Q1/6806
CPC classification number: C12Q1/6806
Abstract: Provided herein are methods, compositions, and kits for determining a location of a target analyte in a biological sample that include the use of terminal deoxynucleotidyl transferase.
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公开(公告)号:US12297486B2
公开(公告)日:2025-05-13
申请号:US17991309
申请日:2022-11-21
Applicant: 10x Genomics, Inc.
Inventor: David Michael Patterson , Sultan Doganay Tuncer , Zachary Bent
IPC: C12Q1/68 , C12N9/00 , C12N9/12 , C12Q1/6813 , C12Q1/6837 , C12Q1/6844
Abstract: The present disclosure provides methods and compositions for detecting and spatially locating analyte interactions and gene expression in a biological sample. For example, provided herein are methods of determining a location of at least one analyte in a biological sample using analyte-binding moieties, proximity ligation, and an array including capture probes.
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公开(公告)号:US20230366008A1
公开(公告)日:2023-11-16
申请号:US18226933
申请日:2023-07-27
Applicant: 10x Genomics, Inc.
Inventor: Jennifer Chew , David Michael Patterson
IPC: C12Q1/6806
CPC classification number: C12Q1/6806
Abstract: Provided herein are methods, compositions, and kits for determining a location of a target analyte in a biological sample that include the use of terminal deoxynucleotidyl transferase.
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公开(公告)号:US11753673B2
公开(公告)日:2023-09-12
申请号:US18181263
申请日:2023-03-09
Applicant: 10x Genomics, Inc.
Inventor: Jennifer Chew , David Michael Patterson
IPC: C12Q1/68 , C12Q1/6806
CPC classification number: C12Q1/6806
Abstract: Provided are methods for determining a location of a target nucleic acid in a biological sample including: disposing the biological sample onto an array including a plurality of capture probes, where a first capture probe includes a first spatial barcode and a capture domain and a second capture probe includes a second spatial barcode and the capture domain. The second capture probe is not covered by the biological sample on the array and is contacted with a solution comprising TdT and one or more dideoxynucleotides, such that a dideoxynucleotide is incorporated into the second capture domain. Target nucleic acids are captured by the first capture probe, and the sequence of the first spatial barcode or a complement thereof and all or a portion of a sequence of the target nucleic acid, or a complement thereof, are used to determine the location of the target nucleic acid in the biological sample.
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公开(公告)号:US20230077364A1
公开(公告)日:2023-03-16
申请号:US17991309
申请日:2022-11-21
Applicant: 10x Genomics, Inc.
Inventor: David Michael Patterson , Sultan Doganay Tuncer , Zachary Bent
IPC: C12Q1/6837 , C12N9/12 , C12N9/00 , C12Q1/6813 , C12Q1/6844
Abstract: The present disclosure provides methods and compositions for detecting and spatially locating analyte interactions and gene expression in a biological sample. For example, provided herein are methods of determining a location of at least one analyte in a biological sample using analyte-binding moieties, proximity ligation, and an array including capture probes.
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7.
公开(公告)号:US20240401109A1
公开(公告)日:2024-12-05
申请号:US18745320
申请日:2024-06-17
Applicant: 10x Genomics, Inc.
Inventor: Hanyoup Kim , Nabil Mikhaiel , Augusto Manuel Tentori , David Michael Patterson , Yifeng Yin , Sultan Doganay Tuncer , Meghan L. F. Frey , Shea Thompson Lance
IPC: C12Q1/6806 , C12Q1/6841
Abstract: The present disclosure features methods, compositions, and kits for multiple barcoding, high-density barcoding, and/or selective release of barcoded capture probes to capture analytes, or proxies thereof, from a biological sample.
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8.
公开(公告)号:US20240002932A1
公开(公告)日:2024-01-04
申请号:US18343190
申请日:2023-06-28
Applicant: 10x Genomics, Inc.
Inventor: Jonathan CHENG , David Michael Patterson
IPC: C12Q1/6874 , C12Q1/6841
CPC classification number: C12Q1/6874 , C12Q2600/16 , C12Q1/6841
Abstract: The present disclosure relates in some aspects to methods and compositions for light-controlled in situ surface patterning of a substrate using a Click chemistry reaction. In some embodiments, a method disclosed herein comprises a copper-catalyzed alkyne-azide (CuAAC) click chemistry reaction for photocontrollable ligation of nucleic acid molecules. A large diversity of barcodes can be created in molecules on the substrate via sequential rounds of light exposure, hybridization, and ligation.
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公开(公告)号:US11840724B2
公开(公告)日:2023-12-12
申请号:US18226933
申请日:2023-07-27
Applicant: 10x Genomics, Inc.
Inventor: Jennifer Chew , David Michael Patterson
IPC: C12Q1/68 , C12Q1/6806
CPC classification number: C12Q1/6806
Abstract: Provided herein are methods for determining a location of a protein in a biological sample including: disposing the sample onto an array comprising a plurality of capture probes, where a first and second capture probe include a first and second spatial barcode, respectively, and a capture domain. The second capture probe is not covered by the sample and is contacted with a solution comprising TdT and one or more dideoxynucleotides, where a dideoxynucleotide is incorporated into the second capture domain. Analyte capture agents comprising an analyte binding moiety that binds protein and an oligonucleotide including an analyte capture sequence and an analyte binding moiety barcode are contacted with the sample. The analyte capture sequence hybridizes to the first capture domain, and the sequence of the first spatial barcode and the analyte binding moiety barcode, or complements thereof, are used to determine the location of the protein in the biological sample.
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公开(公告)号:US20230212650A1
公开(公告)日:2023-07-06
申请号:US18181263
申请日:2023-03-09
Applicant: 10x Genomics, Inc.
Inventor: Jennifer Chew , David Michael Patterson
IPC: C12Q1/6806
CPC classification number: C12Q1/6806
Abstract: Provided herein are methods, compositions, and kits for determining a location of a target analyte in a biological sample that include the use of terminal deoxynucleotidyl transferase.
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