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公开(公告)号:US11891651B2
公开(公告)日:2024-02-06
申请号:US17521239
申请日:2021-11-08
Applicant: Element Biosciences, Inc.
Inventor: Sinan Arslan , Junhua Zhao , Molly He , Samantha Snow , William Light , Matthew Kellinger , Michael Previte , Michael Kim , Hua Yu , Yu-Hsien Hwang-Fu , Marco Tjioe , Andrew Boddicker
IPC: C12Q1/68 , C12Q1/6806 , C12Q1/6834 , C12Q1/6874 , G01N21/64 , C12Q1/6853
CPC classification number: C12Q1/6806 , C12Q1/6834 , C12Q1/6853 , C12Q1/6874 , G01N21/6428 , G01N21/6458 , C12Q2600/158
Abstract: The present disclosure provides compositions and methods that employ the compositions for conducting pairwise sequencing and for generating concatemer template molecules for pairwise sequencing. The concatemers can be generated using a rolling circle amplification reaction which is conducted either on-support, or conducted in-solution and then distributed onto a support. The rolling circle amplification reaction generates concatemers containing tandem copies of a sequence of interest and at least one universal adaptor sequence. An increase in the number of tandem copies in a given concatemer increases the number of sites along the concatemer for hybridizing to multiple sequencing primers which serve as multiple initiation sites for polymerase-catalyzed sequencing reactions. When the sequencing reaction employs detectably labeled nucleotides and/or detectably labeled multivalent molecules (e.g., having nucleotide units), the signals emitted by the nucleotides or nucleotide units that participate in the parallel sequencing reactions along the concatemer yields an increased signal intensity for each concatemer.
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公开(公告)号:US11859241B2
公开(公告)日:2024-01-02
申请号:US18166429
申请日:2023-02-08
Applicant: Element Biosciences, Inc.
Inventor: Sinan Arslan , Junhua Zhao , Molly He , Samantha Snow , William Light , Matthew Kellinger , Michael Previte , Michael Kim , Hua Yu , Yu-Hsien Hwang-Fu , Marco Tjioe , Andrew Boddicker , Mark Ambroso , Tyler Lopez , Michael Klein , Virginia Saade
IPC: C12Q1/68 , C12P19/34 , C12Q1/6806 , C12Q1/6834 , C12Q1/6874 , G01N21/64 , C12Q1/6853
CPC classification number: C12Q1/6806 , C12Q1/6834 , C12Q1/6853 , C12Q1/6874 , G01N21/6428 , G01N21/6458 , C12Q2600/158
Abstract: The present disclosure provides compositions and methods that employ the compositions for conducting pairwise sequencing and for generating concatemer template molecules for pairwise sequencing. The concatemers can be generated using a rolling circle amplification reaction which is conducted either on-support, or conducted in-solution and then distributed onto a support. The rolling circle amplification reaction generates concatemers containing tandem copies of a sequence of interest and at least one universal adaptor sequence. An increase in the number of tandem copies in a given concatemer increases the number of sites along the concatemer for hybridizing to multiple sequencing primers which serve as multiple initiation sites for polymerase-catalyzed sequencing reactions. When the sequencing reaction employs detectably labeled nucleotides and/or detectably labeled multivalent molecules (e.g., having nucleotide units), the signals emitted by the nucleotides or nucleotide units that participate in the parallel sequencing reactions along the concatemer yields an increased signal intensity for each concatemer.
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公开(公告)号:US11535892B1
公开(公告)日:2022-12-27
申请号:US17377279
申请日:2021-07-15
Applicant: Element Biosciences, Inc.
Inventor: Sinan Arslan , Junhua Zhao , Molly He , Samantha Snow , William Light , Matthew Kellinger , Michael Previte , Michael Kim , Hua Yu , Yu-Hsien Hwang-Fu , Marco Tjioe , Andrew Boddicker
IPC: C12Q1/6853 , C12Q1/6874
Abstract: The present disclosure provides compositions and methods that employ the compositions for conducting pairwise sequencing and for generating concatemer template molecules for pairwise sequencing. The concatemers can be generated using a rolling circle amplification reaction which is conducted either on-support, or conducted in-solution and then distributed onto a support. The rolling circle amplification reaction generates concatemers containing tandem copies of a sequence of interest and at least one universal adaptor sequence. An increase in the number of tandem copies in a given concatemer increases the number of sites along the concatemer for hybridizing to multiple sequencing primers which serve as multiple initiation sites for polymerase-catalyzed sequencing reactions. When the sequencing reaction employs detectably labeled nucleotides and/or detectably labeled multivalent molecules (e.g., having nucleotide units), the signals emitted by the nucleotides or nucleotide units that participate in the parallel sequencing reactions along the concatemer yields an increased signal intensity for each concatemer.
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公开(公告)号:US11220707B1
公开(公告)日:2022-01-11
申请号:US17377284
申请日:2021-07-15
Applicant: Element Biosciences, Inc.
Inventor: Sinan Arslan , Junhua Zhao , Molly He , Samantha Snow , William Light , Matthew Kellinger , Michael Previte
IPC: C12P19/34 , C12Q1/6806 , C12Q1/6834 , C12Q1/6874
Abstract: The present disclosure provides compositions and methods that employ the compositions for conducting pairwise sequencing and for generating concatemer template molecules for pairwise sequencing. The concatemers can be generated using a rolling circle amplification reaction which is conducted either on-support, or conducted in-solution and then distributed onto a support. The rolling circle amplification reaction generates concatemers containing tandem copies of a sequence of interest and at least one universal adaptor sequence. An increase in the number of tandem copies in a given concatemer increases the number of sites along the concatemer for hybridizing to multiple sequencing primers which serve as multiple initiation sites for polymerase-catalyzed sequencing reactions. When the sequencing reaction employs detectably labeled nucleotides and/or detectably labeled multivalent molecules (e.g., having nucleotide units), the signals emitted by the nucleotides or nucleotide units that participate in the parallel sequencing reactions along the concatemer yields an increased signal intensity for each concatemer.
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公开(公告)号:US12091657B2
公开(公告)日:2024-09-17
申请号:US17120030
申请日:2020-12-11
Applicant: ELEMENT BIOSCIENCES, INC.
Inventor: Matthew Kellinger , Molly He , Tyler Lopez
IPC: C12N15/10 , C12N9/12 , C12P21/00 , C12Q1/6874
CPC classification number: C12N15/102 , C12N9/1276 , C12N15/1068 , C12Q1/6874 , C12Y207/07049 , C12N2310/321 , C12P21/00 , C12Q1/6874 , C12Q2521/107 , C12Q2525/186
Abstract: Provided herein are compositions and methods for the incorporation of unnatural nucleotides using mutant polymerases, such as reverse transcriptases. Further provided herein are methods of detection and sequencing of polynucleotide sequences. In some aspects, the compositions and methods are used enhance the efficiency and speed of detecting nucleotide bases. The methods and compositions described herein may further reduce time, cost, or scale of devices for next generation sequencing platforms.
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公开(公告)号:US11427855B1
公开(公告)日:2022-08-30
申请号:US17377283
申请日:2021-07-15
Applicant: Element Biosciences, Inc.
Inventor: Sinan Arslan , Junhua Zhao , Molly He , Samantha Snow , William Light , Matthew Kellinger , Michael Previte , Michael Kim , Hua Yu , Yu-Hsien Hwang-Fu , Marco Tjioe , Andrew Boddicker
IPC: C12Q1/68 , C12Q1/6806 , C12Q1/6834 , G01N21/64 , C12Q1/6874
Abstract: The present disclosure provides compositions and methods that employ the compositions for conducting pairwise sequencing and for generating concatemer template molecules for pairwise sequencing. The concatemers can be generated using a rolling circle amplification reaction which is conducted either on-support, or conducted in-solution and then distributed onto a support. The rolling circle amplification reaction generates concatemers containing tandem copies of a sequence of interest and at least one universal adaptor sequence. An increase in the number of tandem copies in a given concatemer increases the number of sites along the concatemer for hybridizing to multiple sequencing primers which serve as multiple initiation sites for polymerase-catalyzed sequencing reactions. When the sequencing reaction employs detectably labeled nucleotides and/or detectably labeled multivalent molecules (e.g., having nucleotide units), the signals emitted by the nucleotides or nucleotide units that participate in the parallel sequencing reactions along the concatemer yields an increased signal intensity for each concatemer.
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公开(公告)号:US11198121B1
公开(公告)日:2021-12-14
申请号:US17218027
申请日:2021-03-30
Applicant: Element Biosciences, Inc.
Inventor: Minghao Guo , Leon Zilun Zhang , Chunhong Zhou , Matthew Kellinger , Michael Previte , Sinan Arslan , Molly He , Hui Zhen Mah , Lei Sun
IPC: G01N21/64 , B01L3/00 , C12Q1/6874 , C12N15/10 , C12Q1/6806
Abstract: Flow cell devices, cartridges, and systems are described that provide reduced manufacturing complexity, lowered consumable costs, and flexible system throughput for nucleic acid sequencing and other chemical or biological analysis applications. The flow cell device can include a capillary flow cell device or a microfluidic flow cell device.
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公开(公告)号:US10768173B1
公开(公告)日:2020-09-08
申请号:US16579794
申请日:2019-09-23
Applicant: Element Biosciences, Inc.
Inventor: Sinan Arslan , Molly He , Matthew Kellinger , Jake Levieux , Michael Previte , Junhua Zhao , Su Zhang
IPC: C12Q1/6869 , C07H21/00 , G01N33/53 , G01N33/58 , C12Q1/6874
Abstract: Multivalent binding compositions including a particle-nucleotide conjugate having a plurality of copies of a nucleotide attached to the particle are described. The multivalent binding compositions allow one to localize detectable signals to active regions of biochemical interaction, e.g., sites of protein-protein interaction, protein-nucleic acid interaction, nucleic acid hybridization, or enzymatic reaction, and can be used to identify sites of base incorporation in elongating nucleic acid chains during polymerase reactions and to provide improved base discrimination for sequencing and array based applications.
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公开(公告)号:US12241891B2
公开(公告)日:2025-03-04
申请号:US17675154
申请日:2022-02-18
Applicant: Element Biosciences, Inc.
Inventor: Michael Previte , Molly He , Junhua Zhao , Hui Zhen Mah , Chunhong Zhou , Sinan Arslan , Matthew Kellinger , Lorenzo Berti , Steve Xiangling Chen
IPC: G01N33/53 , C12Q1/68 , C12Q1/6874 , G01N33/58
Abstract: Multivalent binding compositions including a particle-nucleotide conjugate having a plurality of copies of a nucleotide attached to the particle are described. The multivalent binding compositions allow one to localize detectable signals to active regions of biochemical interaction, e.g., sites of protein-protein interaction, protein-nucleic acid interaction, nucleic acid hybridization, or enzymatic reaction, and can be used to identify sites of base incorporation in elongating nucleic acid chains during polymerase reactions and to provide improved base discrimination for sequencing and array based applications.
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公开(公告)号:US11781185B2
公开(公告)日:2023-10-10
申请号:US17947984
申请日:2022-09-19
Applicant: Element Biosciences, Inc.
Inventor: Sinan Arslan , Molly He , Michael Previte , Ramreddy Tippana , Hua Yu , William Light , Junhua Zhao
IPC: C12Q1/68 , C12Q1/6874 , C12Q1/6806
CPC classification number: C12Q1/6874 , C12Q1/6806
Abstract: Provided herein are fluorescently-labeled nucleotide conjugates for nucleic acid analysis. Also provided are reagents used for forming binding complexes between a fluorescently-labeled nucleotide conjugate and a target nucleic acid sequence in the presence of one or more reagents disclosed herein. Binding complexes can be detected in the presence of the one or more reagents. For example, the one or more reagents may contain a photobleaching reducing agent configured to reduce photobleaching resulting from use of the fluorescently-labeled nucleotide conjugate to form the binding complex in a nucleic acid analysis. Such nucleic acid analysis may be used to identify sites of nucleobase binding or incorporation between the target nucleic acid sequence and one or more nucleotide moieties of the fluorescently-labeled nucleotide conjugate in a nucleic acid sequence reaction.
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