Correcting an assay image of an array of signals generated from a multiplexed hybridization-mediated assay
    1.
    发明授权
    Correcting an assay image of an array of signals generated from a multiplexed hybridization-mediated assay 有权
    校正由多重杂交介导的测定产生的信号阵列的测定图像

    公开(公告)号:US07771939B2

    公开(公告)日:2010-08-10

    申请号:US11439694

    申请日:2006-05-23

    Abstract: Described are methods of assay design and assay image correction, useful for multiplexed genetic screening for mutations and polymorphisms, including CF-related mutants and polymorphs, using an array of probe pairs (in one aspect, where one member is complementary to a particular mutant or polymorphic allele and the other member is complementary to a corresponding wild type allele), with probes bound to encoded particles (e.g., beads) wherein the encoding allows identification of the attached probe. The methods relate to avoiding cross-hybridization by selection of probes and amplicons, as well as separation of reactions of certain probes and amplicons where a homology threshold is exceeded. Methods of correcting a fluorescent image using a background map, where the particles also contain an optical encoding system, are also disclosed.

    Abstract translation: 描述了测定设计和测定图像校正的方法,其可用于使用探针对阵列(在一个方面中,其中一个成员与特定突变体互补的突变和多态性)的多重遗传筛选(包括CF相关突变体和多态性) 多态等位基因和另一个成员与相应的野生型等位基因互补),其中探针与编码的颗粒结合(例如,珠粒),其中编码允许鉴定附着的探针。 该方法涉及通过选择探针和扩增子来避免交叉杂交,以及分离某些探针和扩增子的反应,其中超过同源性阈值。 还公开了使用背景图校正荧光图像的方法,其中颗粒还包含光编码系统。

    Real-time monitoring of nucleic acid target-identifying signals
    3.
    发明授权
    Real-time monitoring of nucleic acid target-identifying signals 有权
    实时监测核酸靶标识别信号

    公开(公告)号:US07344841B2

    公开(公告)日:2008-03-18

    申请号:US11438161

    申请日:2006-05-22

    Abstract: This invention provides compositions and methods for genetic testing of an organism and for correlating the results of the genetic testing with a unique marker that unambiguously identifies the organism. The markers may be internal markers, such as for example single nucleotide polymorphisms (SNPs), short tandem repeats (STRs), or other sites within a genomic locus. Alternatively, the markers may be external, such that they are separately added to the genetic sample before testing.

    Abstract translation: 本发明提供了用于生物体的遗传测试的组合物和方法,并且用于将遗传测试的结果与明确识别生物体的唯一标记相关联。 标记可以是内部标记,例如单核苷酸多态性(SNP),短串联重复序列(STR)或基因组基因座内的其他位点。 或者,标记可以是外部的,使得它们在测试之前分开地添加到遗传样品中。

    Method of nucleic acid typing for selecting registered donors for cross-matching to transfusion recipients
    5.
    发明申请
    Method of nucleic acid typing for selecting registered donors for cross-matching to transfusion recipients 有权
    用于选择注册捐献者的核酸分型方法用于对输血接受者的交叉匹配

    公开(公告)号:US20060105370A1

    公开(公告)日:2006-05-18

    申请号:US11257285

    申请日:2005-10-24

    CPC classification number: C12Q1/6881 C12Q2600/156 C12Q2600/16

    Abstract: Disclosed are a method and an algorithm for genetic cross-matching based on the comparison of recipient and donor genotypes—and the underlying combinations of alleles and haplotypes. The method of the invention, rather than focusing on phenotype prediction, instead relies on a comparison of genetic variants identified in the recipient and available donors, whose information preferably will be compiled in a widely available donor registry, to maximize molecular compatibility. The genotypes can be matched based on the weighted clinical significance of a genotypic difference between donor and recipient, such that certain mismatches are more acceptable than others.

    Abstract translation: 公开了基于接受者和供体基因型的比较以及等位基因和单体型的潜在组合的遗传交叉匹配的方法和算法。 本发明的方法而不是侧重于表型预测,而是依赖于在接受者和可用供体中鉴定的遗传变异体的比较,其信息优选地将在广泛可用的供体登记册中编译,以最大化分子相容性。 可以基于供体和受体之间的基因型差异的加权临床意义来匹配基因型,使得某些错配比其他错配更可接受。

    Multiplexed analysis of polymorphic loci by concurrent interrogation and enzyme-mediated detection
    6.
    发明申请
    Multiplexed analysis of polymorphic loci by concurrent interrogation and enzyme-mediated detection 审中-公开
    通过同时询问和酶介导检测多态位点的多重分析

    公开(公告)号:US20080138800A1

    公开(公告)日:2008-06-12

    申请号:US11438740

    申请日:2006-05-22

    CPC classification number: C12Q1/6827

    Abstract: The invention provides methods and processes for the identification of polymorphisms at one or more designated sites, without interference from non-designated sites located within proximity of such designated sites. Probes are provided capable of interrogation of such designated sites in order to determine the composition of each such designated site. By the methods of this invention, one or more mutations within the CFTR gene and the HLA gene complex can be can be identified.

    Abstract translation: 本发明提供用于在一个或多个指定位点识别多态性的方法和过程,而不受位于该指定位点附近的非指定位点的干扰。 提供能够询问这些指定地点的探测器,以确定每个这样的指定地点的组成。 通过本发明的方法,可以鉴定CFTR基因和HLA基因复合体内的一个或多个突变。

    Hybridization-mediated analysis of polymorphisms
    8.
    发明申请
    Hybridization-mediated analysis of polymorphisms 审中-公开
    杂交介导的多态性分析

    公开(公告)号:US20070128617A1

    公开(公告)日:2007-06-07

    申请号:US11439695

    申请日:2006-05-23

    Abstract: Described are methods of assay design and assay image correction, useful for multiplexed genetic screening for mutations and polymorphisms, including CF-related mutants and polymorphs, using an array of probe pairs (in one aspect, where one member is complementary to a particular mutant or polymorphic allele and the other member is complementary to a corresponding wild type allele), with probes bound to encoded particles (e.g., beads) wherein the encoding allows identification of the attached probe. The methods relate to avoiding cross-hybridization by selection of probes and amplicons, as well as separation of reactions of certain probes and amplicons where a homology threshold is exceeded. Methods of correcting a fluorescent image using a background map, where the particles also contain an optical encoding system, are also disclosed.

    Abstract translation: 描述了测定设计和测定图像校正的方法,其可用于使用探针对阵列(在一个方面中,其中一个成员与特定突变体互补的突变和多态性)的多重遗传筛选(包括CF相关突变体和多态性) 多态等位基因和另一个成员与相应的野生型等位基因互补),其中探针与编码的颗粒结合(例如,珠粒),其中编码允许鉴定附着的探针。 该方法涉及通过选择探针和扩增子来避免交叉杂交,以及分离某些探针和扩增子的反应,其中超过同源性阈值。 还公开了使用背景图校正荧光图像的方法,其中颗粒还包含光编码系统。

    Real-time monitoring of nucleic acid target-identifying signals
    9.
    发明申请
    Real-time monitoring of nucleic acid target-identifying signals 有权
    实时监测核酸靶标识别信号

    公开(公告)号:US20070048762A1

    公开(公告)日:2007-03-01

    申请号:US11438161

    申请日:2006-05-22

    Abstract: This invention provides compositions and methods for genetic testing of an organism and for correlating the results of the genetic testing with a unique marker that unambiguously identifies the organism. The markers may be internal markers, such as for example single nucleotide polymorphisms (SNPs), short tandem repeats (STRs), or other sites within a genomic locus. Alternatively, the markers may be external, such that they are separately added to the genetic sample before testing.

    Abstract translation: 本发明提供了用于生物体的遗传测试的组合物和方法,并且用于将遗传测试的结果与明确识别生物体的唯一标记相关联。 标记可以是内部标记,例如单核苷酸多态性(SNP),短串联重复序列(STR)或基因组基因座内的其他位点。 或者,标记可以是外部的,使得它们在测试之前分开地添加到遗传样品中。

    Determination of the number of tandem repeat nucleotides using encoded probe-displaying beads
    10.
    发明申请
    Determination of the number of tandem repeat nucleotides using encoded probe-displaying beads 有权
    使用编码的探针显示珠测定串联重复核苷酸的数目

    公开(公告)号:US20060257916A1

    公开(公告)日:2006-11-16

    申请号:US11438742

    申请日:2006-05-22

    Abstract: This invention provides compositions and methods for genetic testing of an organism and for correlating the results of the genetic testing with a unique marker that unambiguously identifies the organism. The markers may be internal markers, such as for example single nucleotide polymorphisms (SNPs), short tandem repeats (STRs), or other sites within a genomic locus. Alternatively, the markers may be external, such that they are separately added to the genetic sample before testing.

    Abstract translation: 本发明提供了用于生物体的遗传测试的组合物和方法,并且用于将遗传测试的结果与明确识别生物体的唯一标记相关联。 标记可以是内部标记,例如单核苷酸多态性(SNP),短串联重复序列(STR)或基因组基因座内的其他位点。 或者,标记可以是外部的,使得它们在测试之前分开地添加到遗传样品中。

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