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公开(公告)号:US10984888B2
公开(公告)日:2021-04-20
申请号:US14428312
申请日:2013-09-13
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Nivedita Sumi Majumdar , Thomas Wessel , David C. Woo , Marcin Sikora , Gordon A. Janaway , Shweta Raizada , Joanna Lankester , Jeffrey A. Marks , Daniel Wessel
Abstract: A computer-implemented method for designing a digital PCR (dPCR) experiment is provided. The method includes receiving, from a user, a selection of optimization type. The optimization type may be maximizing the dynamic range, minimizing the number of substrates including reaction sites needed for the experiment, determining a dilution factor, or determining the lower limit of detection, for example. The method further includes receiving, from the user, a precision measure for an experiment, and a minimum concentration of a target in a reaction site for the experiment. The method also includes determining a set of dPCR experiment design factors for the experiment based on the optimization type. The set of dPCR experiment design factors is then displayed to the user.
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公开(公告)号:US11417037B2
公开(公告)日:2022-08-16
申请号:US16937634
申请日:2020-07-24
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Harrison Leong , Nivedita Sumi Majumdar , Jeffrey A. Marks , Theodore E. Straub , Ryan J. Talbot , Kevin S. Bodner , David Hoard
Abstract: A method for generating a data visualization is provided. The method includes displaying a representation of a portion of detected data from a substrate to a user. The method further includes generating a data quality value for the portion of detected data and displaying, along with the representation of the portion of detected data, an indication of data quality value for the portion of detected data. The method further includes selecting, by the user, a quality value threshold, and displaying an adjusted indication of data quality value for the portion of detected data meeting the quality value threshold.
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公开(公告)号:US20250027881A1
公开(公告)日:2025-01-23
申请号:US18766173
申请日:2024-07-08
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Mingsong Chen , Jeffrey A. Marks , Jacob K. Freudenthal , Mauro Aguanno , Woon Liang Terence Soh , Kuan Moon Boo
Abstract: An instrument for processing and/or measuring a biological process comprises a sample processing system and an excitation source exhibiting a spectral function of output power or intensity verses wavelength of output power or intensity. The spectral function has a minima wavelength corresponding to a local minima value of the output power or intensity; a first maxima wavelength corresponding to a first local maxima of output power or intensity, the output power or intensity at the first local maxima being greater than the output power or intensity at any wavelength less than the minima wavelength; a second maxima wavelength corresponding to a second local maxima of output power or intensity, the output power or intensity at the second local maxima being greater than the output at any wavelength greater than the minima wavelength; the minima wavelength is between the first maxima wavelength and the second maxima wavelength.
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公开(公告)号:US20140294268A1
公开(公告)日:2014-10-02
申请号:US14348206
申请日:2012-09-30
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Jacob K. Freudenthal , Jeffrey A. Marks , Francis T. Cheng , Thomas Wessel
IPC: G06T7/00
CPC classification number: G06T7/0012 , G06T5/008 , G06T5/50 , G06T2207/10024 , G06T2207/10064 , G06T2207/10144 , G06T2207/20021 , G06T2207/20216 , G06T2207/30072
Abstract: A method for calibrating a biological instrument is provided. The method comprises the steps of acquiring an image of at least one biological sample array, determining a first region of interest within the image, wherein the first region of interest comprises a first plurality of locations on the at least one biological array; and identifying within the first region of interest, a plurality of image elements associated with each of the first plurality of locations on the at least one biological array.
Abstract translation: 提供了一种用于校准生物仪器的方法。 该方法包括以下步骤:获取至少一个生物样本阵列的图像,确定图像内的第一感兴趣区域,其中所述第一感兴趣区域包括所述至少一个生物阵列上的第一多个位置; 以及在所述第一感兴趣区域内识别与所述至少一个生物阵列上的所述第一多个位置中的每一个相关联的多个图像元素。
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公开(公告)号:US12031916B2
公开(公告)日:2024-07-09
申请号:US17962123
申请日:2022-10-07
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Mingsong Chen , Mauro Aguanno , Kuan Moon Boo , Woon Liang Terence Soh , Jacob K. Freudenthal , Jeffrey A. Marks
CPC classification number: G01N21/6486 , G01N21/0332 , G01N21/274 , G01N21/645 , G01N21/6452 , G01N2201/061 , G01N2201/0624 , G01N2201/0627 , G01N2201/121
Abstract: An instrument for processing and/or measuring a biological process comprises a sample processing system and an excitation source exhibiting a spectral function of output power or intensity verses wavelength of output power or intensity. The spectral function has a minima wavelength corresponding to a local minima value of the output power or intensity; a first maxima wavelength corresponding to a first local maxima of output power or intensity, the output power or intensity at the first local maxima being greater than the output power or intensity at any wavelength less than the minima wavelength; a second maxima wavelength corresponding to a second local maxima of output power or intensity, the output power or intensity at the second local maxima being greater than the output at any wavelength greater than the minima wavelength; the minima wavelength is between the first maxima wavelength and the second maxima wavelength.
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公开(公告)号:US11467092B2
公开(公告)日:2022-10-11
申请号:US16797561
申请日:2020-02-21
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Mingsong Chen , Mauro Aguanno , Kuan Moon Boo , Woon Liang Terence Soh , Jacob K. Freudenthal , Jeffrey A. Marks
Abstract: An instrument for processing and/or measuring a biological process contains a sample processing system, an excitation source, an excitation optical system, an optical sensor, and an emission optical system. The sample processing system is configured to retain a first sample holder and a second sample holder, wherein the number of sample cells is different for each sample holder or a characteristic dimension for the first sample cells is different from that of the second sample holder. The instrument also includes an excitation source temperature controller comprising a temperature sensor that is coupled to the excitation source. The temperature controller is configured to produce a first target temperature when the first sample holder is retained by the instrument and to produce a second target temperature when the second sample holder is retained by the instrument.
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公开(公告)号:US10726589B2
公开(公告)日:2020-07-28
申请号:US14441500
申请日:2013-11-07
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Harrison Leong , Nivedita Sumi Majumdar , Jeffrey A. Marks , Theodore E. Straub , Ryan J. Talbot , Kevin S. Bodner , David Hoard
Abstract: A method for generating a data visualization is provided. The method includes displaying a representation of a portion of detected data from a substrate to a user. The method further includes generating a data quality value for the portion of detected data and displaying, along with the representation of the portion of detected data, an indication of data quality value for the portion of detected data. The method further includes selecting, by the user, a quality value threshold, and displaying an adjusted indication of data quality value for the portion of detected data meeting the quality value threshold.
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8.
公开(公告)号:US20150278437A1
公开(公告)日:2015-10-01
申请号:US14428312
申请日:2013-09-13
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Nivedita Sumi Majumdar , Thomas Wessel , David C. Woo , Marcin Sikora , Gordon A. Janaway , Shweta Raizada , Joanna Lankester , Jeffrey A. Marks , Daniel Wessel
Abstract: A computer-implemented method for designing a digital PCR (dPCR) experiment is provided. The method includes receiving, from a user, a selection of optimization type. The optimization type may be maximizing the dynamic range, minimizing the number of substrates including reaction sites needed for the experiment, determining a dilution factor, or determining the lower limit of detection, for example. The method further includes receiving, from the user, a precision measure for an experiment, and a minimum concentration of a target in a reaction site for the experiment. The method also includes determining a set of dPCR experiment design factors for the experiment based on the optimization type. The set of dPCR experiment design factors is then displayed to the user.
Abstract translation: 提供了一种用于设计数字PCR(dPCR)实验的计算机实现方法。 该方法包括从用户接收优化类型的选择。 优化类型可以使动态范围最大化,例如最小化包括实验所需的反应位点,确定稀释因子或确定检测下限的底物数量。 该方法还包括从用户接收实验的精确度量,以及用于实验的反应部位中靶的最小浓度。 该方法还包括基于优化类型确定实验的一组dPCR实验设计因子。 然后将该组dPCR实验设计因子显示给用户。
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公开(公告)号:US20210313010A1
公开(公告)日:2021-10-07
申请号:US17207488
申请日:2021-03-19
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Nivedita Sumi Majumdar , Thomas Wessel , David C. Woo , Marcin Sikora , Gordon A. Janaway , Shweta Raizada , Joanna Lankester , Jeffrey A. Marks , Daniel Wessel
Abstract: A computer-implemented method for designing a digital PCR (dPCR) experiment is provided. The method includes receiving, from a user, a selection of optimization type. The optimization type may be maximizing the dynamic range, minimizing the number of substrates including reaction sites needed for the experiment, determining a dilution factor, or determining the lower limit of detection, for example. The method further includes receiving, from the user, a precision measure for an experiment, and a minimum concentration of a target in a reaction site for the experiment. The method also includes determining a set of dPCR experiment design factors for the experiment based on the optimization type. The set of dPCR experiment design factors is then displayed to the user.
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公开(公告)号:US10591416B2
公开(公告)日:2020-03-17
申请号:US14766725
申请日:2014-02-24
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Mingsong Chen , Mauro Aguanno , Kuan Moon Boo , Woon Liang Terence Soh , Jacob K. Freudenthal , Jeffrey A. Marks
Abstract: An instrument for processing and/or measuring a biological process contains a sample processing system, an excitation source, an excitation optical system, an optical sensor, and an emission optical system. The sample processing system is configured to retain a first sample holder and a second sample holder, wherein the number of sample cells is different for each sample holder or a characteristic dimension for the first sample cells is different from that of the second sample holder. The instrument also includes an excitation source temperature controller comprising a temperature sensor that is coupled to the excitation source. The temperature controller is configured to produce a first target temperature when the first sample holder is retained by the instrument and to produce a second target temperature when the second sample holder is retained by the instrument.
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