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公开(公告)号:US20210371906A1
公开(公告)日:2021-12-02
申请号:US17400168
申请日:2021-08-12
Applicant: Ramot at Tel-Aviv University Ltd.
Inventor: Yuval EBENSTEIN , Micha FRIDMAN
IPC: C12Q1/6806 , C12P19/30
Abstract: Methodologies for labeling the epigenetic modification 5-hydroxymethyl-cytosine (5hmC) along a DNA molecule, and for determining a presence or a level of this epigenetic modification based on a ratio of fluorescence intensity of a labeled DNA sample to absorption intensity of the DNA sample at 260 nm are disclosed. Related compositions and reagents, and methods of preparing same are also disclosed.
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公开(公告)号:US20180044659A1
公开(公告)日:2018-02-15
申请号:US15557502
申请日:2016-04-14
Applicant: Ramot at Tel-Aviv University Ltd. , Tsinghua University , Intitute of Microbiology, Chinese Academy of Sciences (IMCAS)
Inventor: Ting ZHU , Yuval EBENSTEIN , Chunbo LOU , Wenjun JIANG , Xuejin ZHAO , Tslil GABRIELI
CPC classification number: C12N15/1003 , C12N15/101 , C12Q1/6806 , C12Q1/6869 , C12Q2521/301
Abstract: A method of DNA fragmentation is provided. The method comprising incubating a semi-solid biological sample which comprises the DNA with an auxiliary domain-directed nuclease having a binding affinity and selectivity to pre-defined sites in the DNA so as to yield a DNA fragment-of-interest, to thereby fragment the DNA.
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公开(公告)号:US20190194755A1
公开(公告)日:2019-06-27
申请号:US16324576
申请日:2017-08-10
Applicant: Ramot at Tel-Aviv University Ltd. , Rheinisch-Westfalische Technische Hochschule (RWTH) Aachen
Inventor: Yuval EBENSTEIN , Elmar WEINHOLD , Assaf GRUNWALD , Tslil GABRIELI
IPC: C12Q1/6883 , C12Q1/683
CPC classification number: C12Q1/6883 , C12Q1/683 , C12Q2600/154 , C12Y301/21004
Abstract: A method of diagnosing a disease associated with a DNA repeat sequence is disclosed. The method comprises: (a) determining the number of repeats of a DNA sequence in DNA molecules of a sample of the subject; and (b) determining the CpG methylation status of the DNA molecules, wherein the number of repeats of the DNA sequence and the CpG methylation status of the DNA molecules is indicative of the disease.
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公开(公告)号:US20160115525A1
公开(公告)日:2016-04-28
申请号:US14894350
申请日:2014-01-05
Applicant: RAMOT AT TEL-AVIV UNIVERSITY LTD.
Inventor: Yuval EBENSTEIN , Micha FRIDMAN
IPC: C12Q1/68
CPC classification number: C12Q1/6806 , C12P19/305 , C12Q1/6827 , G01N21/6428 , G01N21/6458 , C12Q2537/164
Abstract: Methodologies for labeling the epigenetic modification 5-hydroxymethyl-cytosine (5hmC) along a DNA molecule, and for imaging this epigenetic modification along a DNA molecule are disclosed. Related compositions and reagents, and methods of preparing same are also disclosed.
Abstract translation: 公开了沿着DNA分子标记表观遗传修饰5-羟甲基 - 胞嘧啶(5hmC)并沿着DNA分子对该表观遗传修饰进行成像的方法。 还公开了相关的组合物和试剂及其制备方法。
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公开(公告)号:US20230220459A1
公开(公告)日:2023-07-13
申请号:US18009013
申请日:2021-06-10
Applicant: Ramot at Tel-Aviv University Ltd.
Inventor: Yuval EBENSTEIN , Shahar ZIRKIN , Yael MICHAELI-HOCH , Noa GILAT , Orit FELDSTEIN , Adaya BEN-MOSHE
IPC: C12Q1/6858
CPC classification number: C12Q1/6858 , C12Q1/6806
Abstract: Methods of detecting methylated CpG are provided. Accordingly, there is provided a method of determining CpG methylation status in a DNA sample, the method comprising: (a) subjecting the DNA sample to bisulfite conversion; (b) amplifying said DNA sample following said (a) to obtain an amplified DNA sample; (c) labeling CpG sites in said amplified DNA sample with a label to obtain a labeled DNA sample; (d) contacting said labeled DNA sample on an array comprising a plurality of probes for said DNA under conditions which allow specific hybridization between said plurality of probes and said DNA; and (e)detecting said hybridization, wherein an amount of said label is indicative of the CpG methylation status in said DNA sample.
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公开(公告)号:US20200248265A1
公开(公告)日:2020-08-06
申请号:US16848891
申请日:2020-04-15
Applicant: Ramot at Tel-Aviv University Ltd. , Rheinisch-Westfälische Technische Hochschule (RWTH) Aachen
Inventor: Yuval EBENSTEIN , Elmar WEINHOLD , Assaf GRUNWALD , Tslil GABRIELI
IPC: C12Q1/6883 , C12Q1/683
Abstract: A method of diagnosing a disease associated with a DNA repeat sequence is disclosed. The method comprises: (a) determining the number of repeats of a DNA sequence in DNA molecules of a sample of the subject; and (b) determining the CpG methylation status of the DNA molecules, wherein the number of repeats of the DNA sequence and the CpG methylation status of the DNA molecules is indicative of the disease.
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公开(公告)号:US20230047930A1
公开(公告)日:2023-02-16
申请号:US17788003
申请日:2020-12-22
Applicant: Ramot at Tel-Aviv University Ltd.
Inventor: Yuval EBENSTEIN , Shahar ZIRKIN , Noa GILAT , Yael MICHAELI HOCH
IPC: C12Q1/6881 , C12Q1/6886
Abstract: Methods and arrays for identifying the cell or tissue origin of DNA are provided. Accordingly there is provided a method of identifying DNA having a methylation pattern distinctive of a cell or tissue type or state comprising: labeling an epigenetic modification of interest in a DNA sample with a label; contacting said sample on an array comprising a plurality of probes for said DNA under conditions which allow specific hybridization between said plurality of probes and said DNA; and detecting said hybridization, wherein an amount of said label is indicative of the cell or tissue type or state, wherein the method is effected in the absence of amplification of said DNA.
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公开(公告)号:US20200340032A1
公开(公告)日:2020-10-29
申请号:US16635276
申请日:2018-07-31
Inventor: Amit MELLER , Tal GILBOA , Chen TORFSTEIN , Yuval EBENSTEIN , Elmar WEINHOLD
Abstract: Methods and kits for detecting the presence of at least one target DNA sequence with or without a modification in a DNA molecule are provided.
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公开(公告)号:US20180327855A1
公开(公告)日:2018-11-15
申请号:US15775015
申请日:2016-11-10
Applicant: Ramot at Tel-Aviv University Ltd.
Inventor: Yuval EBENSTEIN , Shahar ZIRKIN , Yael MICHAELI HOCH
IPC: C12Q1/6886 , C12Q1/6806 , C12Q1/6809 , C12Q1/6811
CPC classification number: C12Q1/6886 , C12Q1/6806 , C12Q1/6809 , C12Q1/6811 , C12Q2525/117
Abstract: A method of detecting the level of 5-hydroxymethylcytosines (5-hmc) in a DNA molecule of a cell having a 5-hmc prevalence lower than 0.002% of total DNA bases is provided. The method comprising: (a) attaching a 5-hmc labeling agent to the DNA molecule; and (b) subjecting the DNA molecule to an imaging method suitable for detecting the labeling agent, thereby detecting the level of 5-hmc in the DNA molecule. Also provided is a method of diagnosing cancer in a subject in need thereof, the method comprising: (a) providing a DNA sample of a cell of the subject; (b) detecting the level of 5-hmc in the DNA sample as described herein; wherein a significant decrease in the level of 5-hmc in the DNA sample, as compared to a control DNA sample from a healthy subject is indicative that the subject has cancer.
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公开(公告)号:US20210254167A1
公开(公告)日:2021-08-19
申请号:US16972691
申请日:2019-06-06
Applicant: Ramot at Tel-Aviv University Ltd.
Inventor: Yuval EBENSTEIN , Shahar ZIRKIN , Sapir MARGALIT , Yael MICHAELI HOCH
IPC: C12Q1/6886 , C12Q1/6834 , G01N33/68 , G01N33/58
Abstract: A method of detecting an epigenetic DNA modification is described herein, the method comprising: attaching to DNA a labeling agent selective for the DNA modification; contacting an aqueous solution comprising the DNA with at least one addressable region on a surface of a substrate, wherein the addressable region comprises a positively charged substance capable of attaching the DNA to the surface, and the addressable region is surrounded by a hydrophobic region; and determining an amount of labeling agent in the addressable region. Further described herein is a kit comprising a substrate comprising discrete hydrophilic regions separated by a hydrophobic region, and a labeling agent selective for an epigenetic DNA modification; as well as an article of manufacture comprising a substrate comprising a discrete regions separated by a hydrophobic region, a positively charged substance and DNA attached thereto, the DNA comprising such a labeling agent.
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