METHODS AND SYSTEMS FOR NON-DESTRUCTIVELY STORING, ACCESSING, AND EDITING INFORMATION USING NUCLEIC ACIDS

    公开(公告)号:US20220028497A1

    公开(公告)日:2022-01-27

    申请号:US17291517

    申请日:2019-08-30

    IPC分类号: G16B50/30 G16B25/10 G16B25/20

    摘要: Processes and systems for non-destructively storing, accessing, and editing information using nucleic acids are disclosed. Representative processes include a process for extracting a data file from a database, wherein the data file comprises information encoded into one or more polynucleotide strands and wherein the database comprises a plurality of polynucleotide strands; a process for expanding a number of unique data files in a database that can be addressed with a predetermined number of oligonucleotide primers, wherein the unique data files each comprise information encoded into one or more polynucleotide strands and wherein the database comprises a plurality of polynucleotide strands; a process for differentially reading information encoded into one or more polynucleotide strands; a process for manipulating files while in storage; and a process for extracting a data file from a database, wherein the data file comprises information encoded into a polynucleotide strand. Systems for carrying out the processes are also disclosed.

    DETERMINING CELL, TISSUE, OR LESION REPRESENTATIONS IN CELL-FREE DNA

    公开(公告)号:US20210005282A1

    公开(公告)日:2021-01-07

    申请号:US16459948

    申请日:2019-07-02

    摘要: A computer-implemented method includes to determine a cell, tissue or a lesion representation in cell-free DNA comprises inputting, to a processor, cell-free DNA (cfDNA) genomic profiles from one or more fluid biopsy samples from a patient and one or more genomic profiles from one or more cells, tissues or lesions from the patient; constructing, by the processor, a plurality of synthetic fluid hypotheses (SFs); comparing, by the processor, each of the plurality of SFs to the cfDNA genomic profiles to determine goodness of fit, of each of the plurality of SFs; selecting, by the processor, a subset of the plurality of SFs, wherein each SF of the subset of SFs has a minimum distance in goodness of fit compared to the cfDNA genomic profile; and outputting, by the processor, based on the subset of SFs, a cell, tissue or a lesion representation in the cfDNA of the patient.

    Re-writable DNA-Based Digital Storage with Random Access

    公开(公告)号:US20200035331A1

    公开(公告)日:2020-01-30

    申请号:US16653564

    申请日:2019-10-15

    IPC分类号: G16B50/00 G16B25/20 B01J19/00

    摘要: The disclosure relates to a re-writable DNA-based digital storage system with a random access feature. An example embodiment includes reading a physical nucleotide sequence of 2n+L bases to form a digital representation of the physical nucleotide sequence; dividing the digital representation of the physical nucleotide sequence into an address representation of n bases, followed by a data representation of L bases, followed by a further address representation of n bases; decoding the data representation into an integer value less than 3L that is a sum of a first addend and a second addend, wherein the data representation includes a first subsequence of bases encoding the first addend followed by a second subsequence of bases encoding the second addend; and storing, in a computer memory, the integer value.