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公开(公告)号:US10662451B2
公开(公告)日:2020-05-26
申请号:US15971878
申请日:2018-05-04
Applicant: Genomatica, Inc.
Inventor: Jun Sun , Mark J. Burk , Anthony P. Burgard , Robin E. Osterhout , Wei Niu , John D. Trawick , Robert Haselbeck
Abstract: The invention provides non-naturally occurring microbial organisms comprising 1,4-butanediol (14-BDO) and gamma-butyrolactone (GBL) pathways comprising at least one exogenous nucleic acid encoding a 14-BDO and GBL pathway enzyme expressed in a sufficient amount to produce 14-BDO and GBL. The invention additionally provides methods of using such microbial organisms to produce 14-BDO and GBL.
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公开(公告)号:US20190330670A1
公开(公告)日:2019-10-31
申请号:US16213671
申请日:2018-12-07
Applicant: Genomatica, Inc.
Inventor: Mark J. Burk , Anthony P. Burgard , Robin E. Osterhout , Priti Pharkya
Abstract: The invention provides a non-naturally occurring microbial organism having a 6-aminocaproic acid, caprolactam, hexametheylenediamine or levulinic acid pathway. The microbial organism contains at least one exogenous nucleic acid encoding an enzyme in the respective 6-aminocaproic acid, caprolactam, hexametheylenediamine or levulinic acid pathway. The invention additionally provides a method for producing 6-aminocaproic acid, caprolactam, hexametheylenediamine or levulinic acid. The method can include culturing a 6-aminocaproic acid, caprolactam or hexametheylenediamine producing microbial organism, where the microbial organism expresses at least one exogenous nucleic acid encoding a 6-aminocaproic acid, caprolactam, hexametheylenediamine or levulinic acid pathway enzyme in a sufficient amount to produce the respective product, under conditions and for a sufficient period of time to produce 6-aminocaproic acid, caprolactam, hexametheylenediamine or levulinic acid.
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公开(公告)号:US20190284592A1
公开(公告)日:2019-09-19
申请号:US16433804
申请日:2019-06-06
Applicant: Genomatica, Inc.
Inventor: Anthony P. Burgard , Robin E. Osterhout , Priti Pharkya , Mark J. Burk
IPC: C12P17/08 , C12N15/52 , C12N5/00 , C08G63/08 , C07D313/04 , C12P17/02 , C12N15/70 , C12N15/63 , C08G18/42
Abstract: The invention provides non-naturally occurring microbial organisms containing caprolactone pathways having at least one exogenous nucleic acid encoding a butadiene pathway enzyme expressed in a sufficient amount to produce caprolactone. The invention additionally provides methods of using such microbial organisms to produce caprolactone by culturing a non-naturally occurring microbial organism containing caprolactone pathways as described herein under conditions and for a sufficient period of time to produce caprolactone.
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公开(公告)号:US10273508B2
公开(公告)日:2019-04-30
申请号:US15148759
申请日:2016-05-06
Applicant: Genomatica, Inc.
Inventor: Stephen J. Van Dien , Anthony P. Burgard , Robert Haselbeck , Catherine J. Pujol-Baxley , Wei Niu , John D. Trawick , Harry Yim , Mark J. Burk , Robin E. Osterhout , Jun Sun
Abstract: The invention provides non-naturally occurring microbial organisms comprising a 1,4-butanediol (BDO) pathway comprising at least one exogenous nucleic acid encoding a BDO pathway enzyme expressed in a sufficient amount to produce BDO and further optimized for expression of BDO. The invention additionally provides methods of using such microbial organisms to produce BDO.
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公开(公告)号:US20190032095A1
公开(公告)日:2019-01-31
申请号:US16041271
申请日:2018-07-20
Applicant: Genomatica, Inc.
Inventor: Robin E. Osterhout , Anthony P. Burgard , Mark J. Burk
IPC: C12P7/44 , C12P7/24 , C12N9/10 , C12P9/00 , C12N9/02 , C07C51/43 , C12N9/12 , C08G63/183 , C12N9/88 , C12N9/04 , C12P7/62 , C07F9/09 , C12P7/40 , C07C63/26 , C07C63/04
Abstract: The invention provides non-naturally occurring microbial organisms having a (2-hydroxy-3-methyl-4-oxobutoxy)phosphonate (2H3M4OP) pathway, p-toluate pathway, and/or terephthalate pathway. The invention additionally provides methods of using such organisms to produce 2H3M4OP, p-toluate or terephthalate. Also provided herein are processes for isolating bio-based aromatic carboxylic acid, in particular, p-toluic acid or terephthalic acid, from a culture medium, wherein the processes involve contacting the culture medium with sufficient carbon dioxide (CO2) to lower the pH of the culture medium to produce a precipitate comprised of the aromatic carboxylic acid.
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公开(公告)号:US10006055B2
公开(公告)日:2018-06-26
申请号:US14869872
申请日:2015-09-29
Applicant: Genomatica, Inc.
Inventor: Mark J. Burk , Anthony P. Burgard , Robin E. Osterhout , Jun Sun , Priti Pharkya
Abstract: The invention provides non-naturally occurring microbial organisms having a butadiene or crotyl alcohol pathway. The invention additionally provides methods of using such organisms to produce butadiene or crotyl alcohol.
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公开(公告)号:US09982281B2
公开(公告)日:2018-05-29
申请号:US14692630
申请日:2015-04-21
Applicant: Genomatica, Inc.
Inventor: Anthony P. Burgard , Mark J. Burk , Robin E. Osterhout , Jun Sun , Priti Pharkya
Abstract: Provided herein is a non-naturally occurring microbial organism having a 1,3-butanediol (1,3-BDO) pathway and comprising at least one exogenous nucleic acid encoding a 1,3-BDO pathway enzyme expressed in a sufficient amount to produce 1,3-BDO. In some embodiments, the pathway includes reducing equivalents from CO or hydrogen. In certain embodiments, a 1,3-BDO pathway proceeds by way of central metabolites pyruvate, succinate or alpha-ketoglutarate. Also provided herein is a method for producing 1,3-BDO, includes culturing such microbial organisms under conditions and for a sufficient period of time to produce 1,3-BDO.
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公开(公告)号:US09909150B2
公开(公告)日:2018-03-06
申请号:US14071318
申请日:2013-11-04
Applicant: Genomatica, Inc.
Inventor: Anthony P. Burgard , Robin E. Osterhout , Stephen J. Van Dien , Cara Ann Tracewell , Priti Pharkya , Stefan Andrae
IPC: C12P7/04 , C12P7/18 , C12P7/24 , C12N1/20 , C12N1/16 , C12N1/14 , C12P7/20 , C12N9/04 , C12N9/06 , C12N9/10 , C12N15/52
CPC classification number: C12P7/24 , C12N1/14 , C12N1/16 , C12N1/20 , C12N9/0006 , C12N9/0028 , C12N9/1007 , C12N15/52 , C12P7/04 , C12P7/18 , C12P7/20 , C12Y101/01244 , C12Y105/0102
Abstract: Provided herein is a non-naturally occurring microbial organism having a methanol metabolic pathway that can enhance the availability of reducing equivalents in the presence of methanol. Such reducing equivalents can be used to increase the product yield of organic compounds produced by the microbial organism, such as 1,2-propanediol, n-propanol, 1,3-propanediol or glycerol. Also provided herein are methods for using such an organism to produce 1,2-propanediol, n-propanol, 1,3-propanediol or glycerol.
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公开(公告)号:US09732361B2
公开(公告)日:2017-08-15
申请号:US14059131
申请日:2013-10-21
Applicant: Genomatica, Inc.
Inventor: Mark J. Burk , Anthony P. Burgard , Jun Sun , Robin E. Osterhout , Priti Pharkya
CPC classification number: C12P5/026 , C07C11/16 , C08F136/06 , C12N15/52
Abstract: The invention provides non-naturally occurring microbial organisms having a butadiene pathway. The invention additionally provides methods of using such organisms to produce butadiene.
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公开(公告)号:US20160053286A1
公开(公告)日:2016-02-25
申请号:US14673600
申请日:2015-03-30
Applicant: Genomatica, Inc.
Inventor: Anthony P. Burgard , Mark J. Burk , Robin E. Osterhout , Priti Pharkya
CPC classification number: C12P7/18 , C07C29/80 , C12N9/0006 , C12N9/0008 , C12N9/1029 , C12N9/1096 , C12N9/88 , C12N15/52 , C12Y101/01 , C12Y101/01157 , C12Y102/01 , C12Y203/01 , C12Y206/01 , C12Y401/01 , C12Y402/01 , C12Y403/01
Abstract: A non-naturally occurring microbial organism includes a microbial organism having a 1,3-butanediol (1,3-BDO) pathway having at least one exogenous nucleic acid encoding a 1,3-BDO pathway enzyme expressed in a sufficient amount to produce 1,3-BDO. The pathway includes an enzyme selected from a 2-amino-4-ketopentanoate (AKP) thiolase, an AKP dehydrogenase, a 2-amino-4-hydroxypentanoate aminotransferase, a 2-amino-4-hydroxypentanoate oxidoreductase (deaminating), a 2-oxo-4-hydroxypentanoate decarboxylase, a 3-hydroxybutyraldehyde reductase, an AKP aminotransferase, an AKP oxidoreductase (deaminating), a 2,4-dioxopentanoate decarboxylase, a 3-oxobutyraldehyde reductase (ketone reducing), a 3-oxobutyraldehyde reductase (aldehyde reducing), a 4-hydroxy-2-butanone reductase, an AKP decarboxylase, a 4-aminobutan-2-one aminotransferase, a 4-aminobutan-2-one oxidoreductase (deaminating), a 4-aminobutan-2-one ammonia-lyase, a butenone hydratase, an AKP ammonia-lyase, an acetylacrylate decarboxylase, an acetoacetyl-CoA reductase (CoA-dependent, aldehyde forming), an acetoacetyl-CoA reductase (CoA-dependent, alcohol forming), an acetoacetyl-CoA reductase (ketone reducing), a 3-hydroxybutyryl-CoA reductase (aldehyde forming), a 3-hydroxybutyryl-CoA reductase (alcohol forming), a 4-hydroxybutyryl-CoA dehydratase, and a crotonase. A method for producing 1,3-BDO, includes culturing such microbial organisms under conditions and for a sufficient period of time to produce 1,3-BDO.
Abstract translation: 非天然存在的微生物生物体包括具有1,3-丁二醇(1,3-BDO)途径的微生物生物,其具有至少一种编码1,3-BDO途径酶的外源核酸,所述外源核酸以足够的量表达,以产生1 ,3-BDO。 该途径包括选自2-氨基-4-酮戊酸酯(AKP)硫解酶,AKP脱氢酶,2-氨基-4-羟基戊酸转氨酶,2-氨基-4-羟基戊酸酯氧化还原酶(脱氨基),2- 4-羟基戊酸脱羧酶,3-羟基丁醛还原酶,AKP氨基转移酶,AKP氧化还原酶(脱氨),2,4-二氧代戊酸脱羧酶,3-氧代丁醛还原酶(还原酮),3-氧代丁醛还原酶 ),4-羟基-2-丁酮还原酶,AKP脱羧酶,4-氨基丁-2-酮氨基转移酶,4-氨基丁-2-酮氧化还原酶(脱氨基),4-氨基丁-2-酮氨裂解酶 乙酰乙酰辅酶A还原酶(CoA依赖性醛形成),乙酰乙酰辅酶A还原酶(CoA依赖性醇形成),乙酰乙酰辅酶A还原酶(酮),乙酰乙酰辅酶A还原酶 还原),3-羟基丁酰辅酶A还原酶(醛形成),3-羟基 Ryl-CoA还原酶(醇形成),4-羟基丁酰辅酶A脱水酶和巴豆酸酶。 一种生产1,3-BDO的方法包括在条件和足够的时间内培养这些微生物生产1,3-BDO。
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