-
公开(公告)号:US20240102003A1
公开(公告)日:2024-03-28
申请号:US18345856
申请日:2023-06-30
Inventor: Arvydas Lubys , Inga Cikotiene , Zana Kapustina , Arturas Berezniakovas , Justina Sulgaite , Simona Zeimyte , Mark Andersen , Michael Allen , Sihong Chen
IPC: C12N15/10 , C12N15/115 , C12Q1/6806
CPC classification number: C12N15/1065 , C12N15/115 , C12Q1/6806 , C12N2310/3517
Abstract: The present disclosure describes oligonucleotide-tethered nucleotides, methods of making them, and methods of using them. The oligonucleotide-tethered nucleotides comprise, in some embodiments, a nucleotide linked to an oligonucleotide of from about 3 to about 100 nucleotides in length. These oligonucleotide-tethered nucleotides can be used to label a plurality of different types of nucleic acids in a plurality of different situations with a known oligonucleotide, which can serve as a barcode in some embodiments. The resulting oligonucleotide-labeled nucleic acids oligo-nucleotides can be used in a variety of nucleic acid sequencing methods.
-
公开(公告)号:US11866740B2
公开(公告)日:2024-01-09
申请号:US17302621
申请日:2021-05-07
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Daniel Mazur , Peter B. Vander Horn , Eileen Tozer , Sihong Chen , Guobin Luo , Joshua Shirley , Kevin Heinemann
CPC classification number: C12N9/1252 , C12Q1/686 , C12Y207/07007 , C12Q1/686 , C12Q2521/101
Abstract: The present disclosure provides compositions, methods, kits, systems and apparatus that are useful for nucleic acid polymerization. In particular, recombinant polymerases and biologically active fragments thereof are provided that allow for nucleic acid amplification. In some aspects, the disclosure provides recombinant polymerases that yield lower systematic error rates and/or improved accuracy, when used in sequencing by synthesis reactions as compared to a control polymerase. In one aspect, the disclosure relates to recombinant polymerases useful for nucleic acid sequencing, genotyping, copy number variation analysis, paired-end sequencing and other forms of genetic analysis. In another aspect, the recombinant polymerases are useful for the amplification of nucleic acid templates during PCR, emPCR, isothermal amplification, recombinase polymerase amplification, rolling circle amplification, strand displacement amplification and proximity ligation amplification. In some aspects, the disclosure relates to recombinant polymerases useful for the generation of nucleic acid libraries and/or nucleic acid templates.
-
公开(公告)号:US11739316B2
公开(公告)日:2023-08-29
申请号:US16908567
申请日:2020-06-22
Inventor: Arvydas Lubys , Inga Cikotiene , Zana Kapustina , Arturas Berezniakovas , Justina Medziune , Simona Zeimyte , Mark Andersen , Michael Allen , Sihong Chen
IPC: C12N15/10 , C12N15/115 , C12Q1/6806
CPC classification number: C12N15/1065 , C12N15/115 , C12Q1/6806 , C12N2310/3517
Abstract: The present disclosure describes oligonucleotide-tethered nucleotides, methods of making them, and methods of using them. The oligonucleotide-tethered nucleotides comprise, in some embodiments, a nucleotide linked to an oligonucleotide of from about 3 to about 100 nucleotides in length. These oligonucleotide-tethered nucleotides can be used to label a plurality of different types of nucleic acids in a plurality of different situations with a known oligonucleotide, which can serve as a barcode in some embodiments. The resulting oligonucleotide-labeled nucleic acids oligonucleotides can be used in a variety of nucleic acid sequencing methods.
-
公开(公告)号:US12215383B2
公开(公告)日:2025-02-04
申请号:US17725369
申请日:2022-04-20
Applicant: Life Technologies Corporation
Inventor: Daniel Mazur , Eileen Tozer , Sihong Chen , Peter Vander Horn , Tommie Lincecum
IPC: C12N9/12 , C12Q1/686 , C12Q1/6869
Abstract: The present disclosure provides compositions, methods, kits, systems and apparatus that are useful for nucleic acid polymerization. In particular, modified polymerases and biologically active fragments thereof, such as modified Taq polymerases, are provided that allow for improved nucleic acid amplification. In some aspects, the disclosure provides modified polymerases having improved thermostability, accuracy, processivity and/or read length as compared to a referenceTaq polymerase. In some aspects, the disclosure relates to modified polymerases or biologically active fragments thereof, useful for amplification methods, and in practically illustrative embodiments, emulsion PCR.
-
公开(公告)号:US20240287502A1
公开(公告)日:2024-08-29
申请号:US18397280
申请日:2023-12-27
Inventor: Arvydas Lubys , Inga Cikotiene , Zana Kapustina , Arturas Berezniakovas , Justina Medziune , Simona Zeimyte , Mark Andersen , Michael Allen , Sihong Chen , Arseny Smirnov , Bryce Alves , Paul Rack
IPC: C12N15/10 , C12N15/115 , C12Q1/6806
CPC classification number: C12N15/1065 , C12N15/115 , C12Q1/6806 , C12N2310/3517
Abstract: The present disclosure describes oligonucleotide-tethered nucleotides, methods of making them, and methods of using them. The oligonucleotide-tethered nucleotides comprise, in some embodiments, a nucleotide linked to an oligonucleotide of from about 3 to about 100 nucleotides in length. These oligonucleotide-tethered nucleotides can be used to label a plurality of different types of nucleic acids in a plurality of different situations with a known oligonucleotide, which can serve as a barcode in some embodiments. The resulting oligonucleotide-labeled nucleic acids oligonucleotides can be used in a variety of nucleic acid sequencing methods.
-
公开(公告)号:US20220307071A1
公开(公告)日:2022-09-29
申请号:US17725369
申请日:2022-04-20
Applicant: Life Technologies Corporation
Inventor: Daniel Mazur , Eileen Tozer , Sihong Chen , Peter Vander Horn , Tommie Lincecum
IPC: C12Q1/686 , C12Q1/6869 , C12N9/12
Abstract: The present disclosure provides compositions, methods, kits, systems and apparatus that are useful for nucleic acid polymerization. In particular, modified polymerases and biologically active fragments thereof, such as modified Taq polymerases, are provided that allow for improved nucleic acid amplification. In some aspects, the disclosure provides modified polymerases having improved thermostability, accuracy, processivity and/or read length as compared to a referenceTaq polymerase. In some aspects, the disclosure relates to modified polymerases or biologically active fragments thereof, useful for amplification methods, and in practically illustrative embodiments, emulsion PCR.
-
公开(公告)号:US11319584B2
公开(公告)日:2022-05-03
申请号:US16947742
申请日:2020-08-14
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Daniel Mazur , Eileen Tozer , Sihong Chen , Peter Vander Horn , Tommie Lincecum
IPC: C12N9/12 , C12Q1/686 , C12Q1/6869
Abstract: The present disclosure provides compositions, methods, kits, systems and apparatus that are useful for nucleic acid polymerization. In particular, modified polymerases and biologically active fragments thereof, such as modified Taq polymerases, are provided that allow for improved nucleic acid amplification. In some aspects, the disclosure provides modified polymerases having improved thermostability, accuracy, processivity and/or read length as compared to a referenceTaq polymerase. In some aspects, the disclosure relates to modified polymerases or biologically active fragments thereof, useful for amplification methods, and in practically illustrative embodiments, emulsion PCR.
-
公开(公告)号:US11001836B2
公开(公告)日:2021-05-11
申请号:US16024175
申请日:2018-06-29
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Mark Andersen , Daniel Mazur , Sihong Chen , Guobin Luo , Xinzhan Peng
IPC: C12N15/10 , C12Q1/6806 , C12Q1/6853 , C12Q1/6855 , C12Q1/686 , C40B20/04 , C40B50/06 , C40B40/06
Abstract: Provided are methods for preparing a library of target nucleic acid sequences, as well as compositions and uses therefor. Methods comprise contacting a nucleic acid sample with a plurality of adaptors capable of amplification of one or more target nucleic acid sequences under conditions wherein the target nucleic acid(s) undergo a first amplification; digesting the resulting first amplification products; repairing the digested target amplicons; and amplifying the repaired products in a second amplification, thereby producing a library of target nucleic acid sequence. Each of the plurality of adaptor compositions comprise a handle and a targeted nucleic acid sequence and optionally one or more tag sequences. Provided methods may be carried out in a single, addition only workflow reaction, allowing for rapid production of highly multiplexed targeted libraries, optionally including unique tag sequences. Resulting library compositions are useful for a variety of applications, including sequencing applications.
-
公开(公告)号:US12065643B2
公开(公告)日:2024-08-20
申请号:US17302674
申请日:2021-05-10
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Mark Andersen , Daniel Mazur , Sihong Chen , Guobin Luo , Xinzhan Peng
IPC: C12N15/10 , C12Q1/6806 , C12Q1/6853 , C12Q1/6855 , C12Q1/686 , C40B40/06 , C40B20/04 , C40B50/06
CPC classification number: C12N15/1068 , C12N15/1065 , C12Q1/6806 , C12Q1/6853 , C12Q1/6855 , C12Q1/686 , C40B20/04 , C40B40/06 , C40B50/06 , C12Q1/6806 , C12Q2521/531 , C12Q2525/119 , C12Q2525/121 , C12Q2525/131 , C12Q2525/155 , C12Q2525/179 , C12Q2531/113 , C12Q2535/122 , C12Q2537/143 , C12Q2549/119 , C12Q2563/179 , C12Q1/6853 , C12Q2521/531 , C12Q2525/119 , C12Q2525/121 , C12Q2525/131 , C12Q2525/155 , C12Q2525/179 , C12Q2531/113 , C12Q2535/122 , C12Q2537/143 , C12Q2549/119 , C12Q2563/179
Abstract: Provided are methods for preparing a library of target nucleic acid sequences, as well as compositions and uses therefor. Methods comprise contacting a nucleic acid sample with a plurality of adaptors capable of amplification of one or more target nucleic acid sequences under conditions wherein the target nucleic acid(s) undergo a first amplification; digesting the resulting first amplification products; repairing the digested target amplicons; and amplifying the repaired products in a second amplification, thereby producing a library of target nucleic acid sequence. Each of the plurality of adaptor compositions comprise a handle and a targeted nucleic acid sequence and optionally one or more tag sequences. Provided methods may be carried out in a single, addition only workflow reaction, allowing for rapid production of highly multiplexed targeted libraries, optionally including unique tag sequences. Resulting library compositions are useful for a variety of applications, including sequencing applications.
-
公开(公告)号:US20220403446A1
公开(公告)日:2022-12-22
申请号:US17638435
申请日:2020-08-28
Applicant: Life Technologies Corporation
Inventor: Sihong Chen
IPC: C12Q1/686
Abstract: The present invention is directed to compositions, methods and kits useful for the generation of nucleic acids from RNA templated and further nucleic acid amplification and detection. Specifically, the invention is directed to the generation and amplification of nucleic acids by reverse transcriptase polymerase chain reaction (RT-PCR). Provided are compositions and methods for improved amplification of nucleic acid molecules in a two-step, addition only RT-PCR procedure. The invention thus facilitates the rapid and efficient amplification of nucleic acid molecules and the detection and quantitation of RNA molecules, and is useful for a variety of research, industrial, medical and forensic purposes.
-
-
-
-
-
-
-
-
-