Methods and reagents for detecting target binding by nucleic acid ligands
    1.
    发明申请
    Methods and reagents for detecting target binding by nucleic acid ligands 审中-公开
    用于检测核酸配体靶结合的方法和试剂

    公开(公告)号:US20060057573A1

    公开(公告)日:2006-03-16

    申请号:US10504696

    申请日:2003-02-10

    IPC分类号: C12Q1/68 C12Q1/42

    CPC分类号: C12N15/115 G01N33/58

    摘要: The present invention provides novel methods and reagents for detecting the binding of protein targets to nucleic acid ligands. Using Universal Protein Stains (UPS), proteins bound by nucleic acid ligands may be labeled with a detectable moiety. The methods and reagents are particularly useful for the detection of protein targets bound to multiplexed arrays of nucleic acid ligands. The present invention also provides novel methods for the multiplexed evaluation of photocrosslinking nucleic acid ligands. The methods allow one simultaneously to: (1) evaluate the performance (dynamic range) of a plurality of photocrosslinking nucleic acid ligands; and (2) assess the specificity of each photocrosslinking nucleic acid ligand for its cognate target protein. Photocrosslinking nucleic acid ligands with the most desirable properties can then be selected for use in diagnostic and prognostic medical assays. The present invention also provides a photocrosslinking nucleic acid ligand that binds specifically to HIV gp120MN.

    摘要翻译: 本发明提供用于检测蛋白质靶标与核酸配体的结合的新型方法和试剂。 使用通用蛋白污渍(UPS),可以用可检测的部分标记由核酸配体结合的蛋白质。 所述方法和试剂对于检测与核酸配体复合阵列结合的蛋白质靶标特别有用。 本发明还提供了用于光交联核酸配体的多重评价的新方法。 该方法同时允许:(1)评估多个光交联核酸配体的性能(动态范围); 和(2)评估每个光交联核酸配体对其同源靶蛋白的特异性。 然后可以选择具有最理想特性的光交联核酸配体用于诊断和预后医学测定。 本发明还提供了与HIV gp120MN特异性结合的光交联核酸配体。

    Methods and reagents for detecting target binding by nucleic acid ligands
    2.
    发明授权
    Methods and reagents for detecting target binding by nucleic acid ligands 有权
    用于检测核酸配体靶结合的方法和试剂

    公开(公告)号:US08071288B2

    公开(公告)日:2011-12-06

    申请号:US12030024

    申请日:2008-02-12

    IPC分类号: C12Q1/68 C07K14/00

    CPC分类号: C12N15/115 G01N33/58

    摘要: The present invention provides novel methods and reagents for detecting the binding of protein targets to nucleic acid ligands. Using Universal Protein Stains (UPS), proteins bound by nucleic acid ligands may be labeled with a detectable moiety. The methods and reagents are particularly useful for the detection of protein targets bound to multiplexed arrays of nucleic acid ligands. The present invention also provides novel methods for the multiplexed evaluation of photocrosslinking nucleic acid ligands. The methods allow one simultaneously to: (1) evaluate the performance (dynamic range) of a plurality of photocrosslinking nucleic acid ligands; and (2) assess the specificity of each photocrosslinking nucleic acid ligand for its cognate target protein. Photocrosslinking nucleic acid ligands with the most desirable properties can then be selected for use in diagnostic and prognostic medical assays. The present invention also provides a photocrosslinking nucleic acid ligand that binds specifically to HIV gp120MN.

    摘要翻译: 本发明提供用于检测蛋白质靶标与核酸配体的结合的新型方法和试剂。 使用通用蛋白污渍(UPS),可以用可检测的部分标记由核酸配体结合的蛋白质。 所述方法和试剂对于检测与核酸配体复合阵列结合的蛋白质靶标特别有用。 本发明还提供了用于光交联核酸配体的多重评价的新方法。 该方法同时允许:(1)评估多个光交联核酸配体的性能(动态范围); 和(2)评估每个光交联核酸配体对其同源靶蛋白的特异性。 然后可以选择具有最理想特性的光交联核酸配体用于诊断和预后医学测定。 本发明还提供了与HIV gp120MN特异性结合的光交联核酸配体。

    Methods and Reagents for Detecting Target Binding by Nucleic Acid Ligands
    3.
    发明申请
    Methods and Reagents for Detecting Target Binding by Nucleic Acid Ligands 有权
    用于检测核酸配体靶标结合的方法和试剂

    公开(公告)号:US20080160535A1

    公开(公告)日:2008-07-03

    申请号:US12030024

    申请日:2008-02-12

    IPC分类号: C12Q1/68 C40B60/10 C07H21/04

    CPC分类号: C12N15/115 G01N33/58

    摘要: The present invention provides novel methods and reagents for detecting the binding of protein targets to nucleic acid ligands. Using Universal Protein Stains (UPS), proteins bound by nucleic acid ligands may be labeled with a detectable moiety. The methods and reagents are particularly useful for the detection of protein targets bound to multiplexed arrays of nucleic acid ligands. The present invention also provides novel methods for the multiplexed evaluation of photocrosslinking nucleic acid ligands. The methods allow one simultaneously to: (1) evaluate the performance (dynamic range) of a plurality of photocrosslinking nucleic acid ligands; and (2) assess the specificity of each photocrosslinking nucleic acid ligand for its cognate target protein. Photocrosslinking nucleic acid ligands with the most desirable properties can then be selected for use in diagnostic and prognostic medical assays. The present invention also provides a photocrosslinking nucleic acid ligand that binds specifically to HIV gp120MN.

    摘要翻译: 本发明提供用于检测蛋白质靶标与核酸配体的结合的新型方法和试剂。 使用通用蛋白污渍(UPS),可以用可检测的部分标记由核酸配体结合的蛋白质。 所述方法和试剂对于检测与核酸配体复合阵列结合的蛋白质靶标特别有用。 本发明还提供了用于光交联核酸配体的多重评价的新方法。 该方法同时允许:(1)评估多个光交联核酸配体的性能(动态范围); 和(2)评估每个光交联核酸配体对其同源靶蛋白的特异性。 然后可以选择具有最理想特性的光交联核酸配体用于诊断和预后医学测定。 本发明还提供了与HIV gp120MN特异性结合的光交联核酸配体。

    MULTIPLEXED ANALYSES OF TEST SAMPLES
    4.
    发明申请
    MULTIPLEXED ANALYSES OF TEST SAMPLES 审中-公开
    测试样本的多重分析

    公开(公告)号:US20070166740A1

    公开(公告)日:2007-07-19

    申请号:US11623535

    申请日:2007-01-16

    IPC分类号: C12Q1/68 G01N33/53

    摘要: The present disclosure describes methods, devices, reagents, and kits for the detection of one or more target molecules that may be present in a test sample. In one embodiment, a test sample is contacted with an aptamer that includes a tag and has a specific affinity for a target molecule. An aptamer affinity complex that includes an aptamer bound to its target molecule is allowed to form. If the test sample contains the target molecule, an aptamer affinity complex will generally form in the test sample. The aptamer affinity complex is optionally converted to an aptamer covalent complex that includes an aptamer covalently bound to its target molecule. The aptamer affinity complex (or optional aptamer covalent complex) can then be detected and/or quantified using any of a variety of methods known to one skilled in the art, including using a solid support, using mass spectrometry, and using quantitative polymerase chain reaction (Q-PCR).

    摘要翻译: 本公开描述了用于检测可能存在于测试样品中的一种或多种靶分子的方法,装置,试剂和试剂盒。 在一个实施方案中,将测试样品与包含标签的适体接触并对靶分子具有特异性亲和力。 允许形成包含与其靶分子结合的适体的适体亲和复合体。 如果测试样品含有目标分子,通常将在测试样品中形成适体亲和复合体。 适体亲和复合物任选地转化为适体共价复合物,其包括与其靶分子共价结合的适体。 然后可以使用本领域技术人员已知的各种方法中的任一种检测和/或定量适体亲和复合物(或任选的适体共价复合物),包括使用固体支持物,使用质谱法和使用定量聚合酶链反应 (Q-PCR)。

    MULTIPLEXED ANALYSES OF TEST SAMPLES
    5.
    发明申请

    公开(公告)号:US20070166741A1

    公开(公告)日:2007-07-19

    申请号:US11623580

    申请日:2007-01-16

    IPC分类号: C12Q1/68 G01N33/53

    摘要: The present disclosure describes methods, devices, reagents, and kits for the detection of one or more target molecules that may be present in a test sample. In one embodiment, a test sample is contacted with an aptamer that includes a tag and has a specific affinity for a target molecule. An aptamer affinity complex that includes an aptamer bound to its target molecule is allowed to form. If the test sample contains the target molecule, an aptamer affinity complex will generally form in the test sample. The aptamer affinity complex is optionally converted to an aptamer covalent complex that includes an aptamer covalently bound to its target molecule. The aptamer affinity complex (or optional aptamer covalent complex) can then be detected and/or quantified using any of a variety of methods known to one skilled in the art, including using a solid support, using mass spectrometry, and using quantitative polymerase chain reaction (Q-PCR).

    Method for generating aptamers with improved off-rates
    6.
    发明授权
    Method for generating aptamers with improved off-rates 有权
    用于产生具有改善的脱离率的适配体的方法

    公开(公告)号:US08975026B2

    公开(公告)日:2015-03-10

    申请号:US13382493

    申请日:2010-07-09

    IPC分类号: C12N15/115

    摘要: The present disclosure describes the identification and use of aptamers and photoaptamers having slower dissociation rate constants than those obtained using previously described methods. Specifically, the present disclosure describes methods for the identification and use of aptamers to one or more targets within a histological or cytological sample, which have slow rates of dissociation. The aptamers may be used to assess localization, relative density, and presence or absence of one or more targets in cytological and histological samples. Targets may be selected that are specific and diagnostic of a given disease state for which the sample was collected. The aptamers may also be used to introduce target specific signal moieties. In addition to target identification, the aptamers may be used to amplify signal generation through a variety of methods.

    摘要翻译: 本公开描述了具有比使用先前描述的方法获得的那些更快的解离速率常数的适配体和光致抗体的鉴定和使用。 具体地,本公开描述了用于鉴定和使用适配体到组织学或细胞学样品中的一种或多种目标的方法,其具有缓慢的解离速率。 适配体可用于评估细胞学和组织学样品中的一种或多种靶标的定位,相对密度和存在或不存在。 可以选择对于样品收集的给定疾病状态的特异性和诊断性的靶标。 适体也可以用于引入目标特异性信号部分。 除目标识别之外,适体可用于通过各种方法放大信号产生。

    Selex and photoSELEX
    9.
    发明授权
    Selex and photoSELEX 有权
    Selex和photoSELEX

    公开(公告)号:US08409795B2

    公开(公告)日:2013-04-02

    申请号:US12175388

    申请日:2008-07-17

    IPC分类号: C12Q1/68

    摘要: The present disclosure describes improved SELEX methods for generating nucleic acid ligands that are capable of binding to target molecules and improved photoSELEX methods for generating photoreactive nucleic acid ligands that are capable of both binding and covalently crosslinking to target molecules. The disclosure further describes nucleic acid libraries having expanded physical and chemical properties and their use in SELEX and photoSELEX; methods for increasing the crosslinking efficiencies of photoaptamers; methods for producing photoaptamers having selective modifications that enhance functionality and minimize non-specific photoreactions; and methods for generating truncated nucleic acid ligands from nucleic acid ligands of longer length. The disclosure further describes aptamers and photoaptamers obtained by using any of the foregoing.

    摘要翻译: 本公开描述了用于产生能够结合靶分子的核酸配体的改进的SELEX方法和用于产生能够与靶分子结合和共价交联的光反应性核酸配体的改进的photoSELEX方法。 本公开进一步描述了具有扩展的物理和化学性质及其在SELEX和photoSELEX中的用途的核酸文库; 提高光催化剂交联效率的方法; 制备具有增强功能并使非特异性光反应最小化的选择性修饰的光致抗体的方法; 以及用于从较长长度的核酸配体产生截短的核酸配体的方法。 本公开进一步描述了通过使用上述任何一种获得的适体和光致抗体。