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公开(公告)号:US11692938B2
公开(公告)日:2023-07-04
申请号:US16905350
申请日:2020-06-18
发明人: Ali Kabiri , Bing Shen , James Beach , Kyle Preston , Gerard Schmid
IPC分类号: G01N21/64 , H01L27/146
CPC分类号: G01N21/6428 , G01N21/6402 , G01N21/6408 , H01L27/14625 , H01L27/14685 , G01N2021/6439 , G01N2201/063 , G01N2201/06113
摘要: Apparatus and methods relating to photonic bandgap optical nanostructures are described. Such optical nanostructures may exhibit prohibited photonic bandgaps or allowed photonic bands, and may be used to reject (e.g., block or attenuate) radiation at a first wavelength while allowing transmission of radiation at a second wavelength. Examples of photonic bandgap optical nanostructures includes periodic and quasi-periodic structures, with periodicity or quasi-periodicity in one, two, or three dimensions and structural variations in at least two dimensions. Such photonic bandgap optical nanostructures may be formed in integrated devices that include photodiodes and CMOS circuitry arranged to analyze radiation received by the photodiodes.
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32.
公开(公告)号:US20220364996A1
公开(公告)日:2022-11-17
申请号:US17877837
申请日:2022-07-29
发明人: Jonathan M. Rothberg , Ali Kabiri , Jason W. Sickler , Brett J. Gyartas , Jeremy Lackey , Gerard Schmid , Benjamin Cipriany , Jack Jewell , Lawrence C. West , Michael Ferrigno , Paul E. Glenn , Anthony Bellofiore
IPC分类号: G01N21/64 , C12Q1/6874 , G01N21/77 , B01L3/00 , C12Q1/6869
摘要: Apparatus and methods for analyzing single molecule and performing nucleic acid sequencing. An integrated device includes multiple pixels with sample wells configured to receive a sample, which, when excited, emits radiation; at least one element for directing the emission radiation in a particular direction; and a light path along which the emission radiation travels from the sample well toward a sensor. The apparatus also includes an instrument that interfaces with the integrated device. Each sensor may detect emission radiation from a sample in a respective sample well. The instrument includes an excitation light source for exciting the sample in each sample well.
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公开(公告)号:US20210270740A1
公开(公告)日:2021-09-02
申请号:US17190331
申请日:2021-03-02
发明人: Gerard Schmid , Dajiang Yang , Eric A.G. Webster , Xin Wang , Todd Rearick , Changhoon Choi , Ali Kabiri , Kyle Preston , Brian Reed
IPC分类号: G01N21/64
摘要: Some aspects relate to an integrated circuit, comprising at least one photodetection region configured to generate charge carriers responsive to incident photons emitted from a sample, at least one charge storage region configured to receive the charge carriers from the photodetection region, and at least one controller configured to obtain information about the incident photons, the information comprising at least one member selected from the group comprising pulse duration and interpulse duration and at least one member selected from the group comprising wavelength information, luminescence lifetime information, and intensity information. In some embodiments, the information comprises at least three, four, and/or five members selected from the group comprising wavelength information, luminescence lifetime information, intensity information, pulse duration information, and interpulse duration information. In some embodiments, the information obtained may be used to identify the sample.
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公开(公告)号:US20210218224A1
公开(公告)日:2021-07-15
申请号:US17149400
申请日:2021-01-14
发明人: Matthew DYER , Jonathan M. Rothberg , Brian Reed , Todd Rearick , Gerard Schmid , Faisal R. Ahmad , Michael Bellos , Benjamin Cipriany , Kyle Preston , Ali Kabiri
摘要: Disclosed herein are aspects of a pulsed laser light source for producing excitation light in an integrated bioanalytical system. In some embodiments, the light source comprises one or more laser diodes that produces pulsed light signals synchronized with a common clock source for excitation of samples within reaction chambers on at least one chip. The light source may be used to provide excitation for a system with a large sensor array with reduced cost, size and electrical power requirements.
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公开(公告)号:US20210148821A1
公开(公告)日:2021-05-20
申请号:US17161425
申请日:2021-01-28
发明人: Jonathan M. Rothberg , Ali Kabiri , Gerard Schmid , Keith G. Fife , James Beach , Jason W. Sickler , Lawrence C. West , Paul E. Glenn , Kyle Preston , Farshid Ghasemi , Benjamin Cipriany , Jeremy Lackey
IPC分类号: G01N21/64 , C12Q1/6869 , C12Q1/6874 , G01N21/77 , G01N33/543
摘要: System and methods for analyzing single molecules and performing nucleic acid sequencing. An integrated device may include multiple pixels with sample wells configured to receive a sample, which when excited, emits radiation. The integrated device includes a surface having a trench region recessed from a portion of the surface and an array of sample wells, disposed in the trench region. The integrated device also includes a waveguide configured to couple excitation energy to at least one sample well in the array and positioned at a first distance from a surface of the trench region and at a second distance from the surface in a region separate from the trench region. The first distance is smaller than the second distance. The system also includes an instrument that interfaces with the integrated device. The instrument may include an excitation energy source for providing excitation energy to the integrated device by coupling to an excitation energy coupling region of the integrated device.
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公开(公告)号:US20210041625A1
公开(公告)日:2021-02-11
申请号:US16987937
申请日:2020-08-07
发明人: Ali Kabiri , Bing Shen , Gerard Schmid , James Beach , Kyle Preston , Sharath Hosali
摘要: Apparatus and methods for improving optical signal collection in an integrated device are described. A microdisk can be formed in an integrated device and increase collection and/or concentration of radiation incident on the microdisk and re-radiated by the microdisk. An example integrated device that can include a microdisk may be used for analyte detection and/or analysis. Such an integrated device may include a plurality of pixels, each having a reaction chamber for receiving a sample to be analyzed, an optical microdisk, and an optical sensor configured to detect optical emission from the reaction chamber. The microdisk can comprise a dielectric material having a first index of refraction that is embedded in one or more surrounding materials having one or more different refractive index values.
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37.
公开(公告)号:US20200218009A1
公开(公告)日:2020-07-09
申请号:US16733296
申请日:2020-01-03
发明人: Kyle Preston , Bing Shen , Ali Kabiri , Gerard Schmid
摘要: Optical waveguides and couplers for delivering light to an array of photonic elements in a photonic integrated device. The photonic integrated device and related instruments and systems may be used to analyze samples in parallel. The photonic integrated device may include a grating coupler configured to receive light from an external light source and optically couple with multiple waveguides configured to optically couple with sample wells of the photonic integrated device.
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38.
公开(公告)号:US20200088639A1
公开(公告)日:2020-03-19
申请号:US16688728
申请日:2019-11-19
发明人: Jonathan M. Rothberg , Ali Kabiri , Jason W. Sickler , Brett J. Gyarfas , Jeremy Lackey , Gerard Schmid , Lawrence C. West , Keith G. Fife , Benjamin Cipriany , Farshid Ghasemi
IPC分类号: G01N21/64 , C12Q1/6869 , C12Q1/6874
摘要: System and methods for analyzing single molecules and performing nucleic acid sequencing. An integrated device includes multiple pixels with sample wells configured to receive a sample, which when excited, emits radiation. The integrated device includes at least one waveguide configured to propagate excitation energy to the sample wells from a region of the integrated device configured to couple with an excitation energy source. A pixel may also include at least one element for directing the emission energy towards a sensor within the pixel. The system also includes an instrument that interfaces with the integrated device. The instrument may include an excitation energy source for providing excitation energy to the integrated device by coupling to an excitation energy coupling region of the integrated device. One of multiple markers distinguishable by temporal parameters of the emission energy may label the sample and configuration of the sensor within a pixel may allow for detection of a temporal parameter associated with the marker labeling the sample.
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39.
公开(公告)号:US20190212265A1
公开(公告)日:2019-07-11
申请号:US16354839
申请日:2019-03-15
发明人: Jonathan M. Rothberg , Ali Kabiri , Jason W. Sickler , Brett J. Gyarfas , Jeremy Lackey , Gerard Schmid , Lawrence C. West , Keith G. Fife , Benjamin Cipriany , Farshid Ghasemi
IPC分类号: G01N21/64 , C12Q1/6869 , C12Q1/6874
CPC分类号: G01N21/6408 , C12Q1/6869 , C12Q1/6874 , G01N21/6428 , G01N21/6454 , G01N21/648 , G01N2021/6419 , G01N2021/6421 , G01N2021/6439 , G01N2021/6463 , G01N2201/0696 , G01N2201/08 , G01N2201/12
摘要: System and methods for analyzing single molecules and performing nucleic acid sequencing. An integrated device includes multiple pixels with sample wells configured to receive a sample, which when excited, emits radiation. The integrated device includes at least one waveguide configured to propagate excitation energy to the sample wells from a region of the integrated device configured to couple with an excitation energy source. A pixel may also include at least one element for directing the emission energy towards a sensor within the pixel. The system also includes an instrument that interfaces with the integrated device. The instrument may include an excitation energy source for providing excitation energy to the integrated device by coupling to an excitation energy coupling region of the integrated device. One of multiple markers distinguishable by temporal parameters of the emission energy may label the sample and configuration of the sensor within a pixel may allow for detection of a temporal parameter associated with the marker labeling the sample.
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40.
公开(公告)号:US20180328850A1
公开(公告)日:2018-11-15
申请号:US16028159
申请日:2018-07-05
发明人: Jonathan M. Rothberg , Ali Kabiri , Jason W. Sickler , Brett J. Gyarfas , Jeremy Lackey , Gerard Schmid , Benjamin Cipriany , Jack Jewell , Lawrence C. West , Michael Ferrigno , Paul E. Glenn , Anthony Bellofiore
IPC分类号: G01N21/64 , B01L3/00 , C12Q1/6869 , C12Q1/6874 , G01N21/77
CPC分类号: G01N21/6486 , B01L3/5085 , B01L2200/12 , B01L2300/0829 , B01L2300/0887 , B01L2300/0893 , B01L2300/168 , C12Q1/6869 , C12Q1/6874 , C12Q2521/101 , C12Q2537/157 , C12Q2563/107 , C12Q2565/607 , G01N21/64 , G01N21/645 , G01N21/6452 , G01N21/648 , G01N21/7743 , G01N21/7746 , G01N2021/6419 , G01N2021/6441 , G01N2021/6478 , G01N2201/02 , G01N2201/06113 , G01N2201/0612 , G01N2201/062 , G01N2201/068 , G01N2201/125 , Y10T29/49016 , C12Q2525/101
摘要: Apparatus and methods for analyzing single molecule and performing nucleic acid sequencing. An integrated device includes multiple pixels with sample wells configured to receive a sample, which, when excited, emits radiation; at least one element for directing the emission radiation in a particular direction; and a light path along which the emission radiation travels from the sample well toward a sensor. The apparatus also includes an instrument that interfaces with the integrated device. Each sensor may detect emission radiation from a sample in a respective sample well. The instrument includes an excitation light source for exciting the sample in each sample well.
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