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公开(公告)号:US20200172895A1
公开(公告)日:2020-06-04
申请号:US16615538
申请日:2018-05-25
Applicant: The General Hospital Corporation
Inventor: J. Keith Joung , James Angstman
Abstract: Described herein are methods and compositions for improving the genome-wide specificities of targeted base editing technologies. Herein, we describe dimeric base editing (BE) technologies that use split deaminases (sDA) that are functional when brought into close proximity to each other, one fused to a ZF and one to an nCas9-UGI protein comprising one or more UGIs, so as to limit the ability of the deaminase domain from deaminating at off-target ssDNA target sites independent of nCas9 R-loop formation. Thus, provided herein are fusion proteins comprising: (i) a first portion of a split deaminase (“sDAI”) enzyme fused to a programmable DNA-binding domain; or (ii) a second portion of a split deaminase (“sDA2”) fused to an nCas9 protein. The present invention also includes the vectors and cells comprising the vectors, as well as kits comprising the proteins and nucleic acids described herein.
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公开(公告)号:US09890364B2
公开(公告)日:2018-02-13
申请号:US13838520
申请日:2013-03-15
Applicant: The General Hospital Corporation
Inventor: J. Keith Joung , Morgan Maeder , James Angstman
IPC: A61K38/17 , C07K14/435 , C07K19/00 , C12N15/62 , A61K48/00 , A61P35/00 , A61P25/18 , A61P9/00 , C12N9/02
CPC classification number: C12N9/0071 , C07K2319/80 , C07K2319/81
Abstract: Fusion proteins comprising a DNA binding domain, e.g., a TAL effector repeat array or zinc finger, and a catalytic domain comprising a sequence that catalyzes hydroxylation of methylated cytosines in DNA, and methods of use thereof.
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公开(公告)号:US12286641B2
公开(公告)日:2025-04-29
申请号:US17331551
申请日:2021-05-26
Applicant: The General Hospital Corporation
Inventor: J. Keith Joung , Benjamin Kleinstiver , Jason Michael Gehrke , Shengdar Tsai , James Angstman , Rebecca Tayler Cottman
Abstract: The present invention relates to methods to improve the absolute rate of homology-directed repair (HDR) and/or to improve the relative rate of HDR compared with non-homologous end joining (NHEJ).
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公开(公告)号:US11920152B2
公开(公告)日:2024-03-05
申请号:US17099503
申请日:2020-11-16
Applicant: The General Hospital Corporation
Inventor: J. Keith Joung , James Angstman , Shengdar Tsai
IPC: C07H21/02 , C07K14/005 , C07K14/195 , C12N9/02 , C12N9/10 , C12N9/16 , C12N9/22 , C12N9/96 , C12N15/01 , C12N15/10 , C12N15/11 , C12N15/63 , C12N15/85 , C12N15/90
CPC classification number: C12N15/907 , C07K14/005 , C07K14/195 , C12N9/0071 , C12N9/1007 , C12N9/16 , C12N9/22 , C12N9/96 , C12N15/01 , C12N15/102 , C12N15/1031 , C12N15/11 , C12N15/63 , C12N15/85 , C12Y301/21004 , C07K2319/00 , C07K2319/01 , C07K2319/80 , C12N2310/20 , C12N2710/00033 , C12N2770/00033 , C12N2800/80 , C12Y114/11 , C12Y201/01 , C12Y301/00
Abstract: Methods for increasing specificity of RNA-guided genome editing, e.g., editing using CRISPR/Cas9 systems.
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公开(公告)号:US20230024833A1
公开(公告)日:2023-01-26
申请号:US17781500
申请日:2020-12-04
Applicant: The General Hospital Corporation
Inventor: J. Keith Joung , James Angstman
Abstract: Provided herein are compositions and methods for improving the genome-wide specificities of targeted base editing technologies.
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公开(公告)号:US11021718B2
公开(公告)日:2021-06-01
申请号:US15516310
申请日:2015-10-01
Applicant: The General Hospital Corporation
Inventor: J. Keith Joung , Benjamin Kleinstiver , Jason Michael Gehrke , Shengdar Tsai , James Angstman , Rebecca Tayler Cottman
Abstract: The present invention relates to methods to improve the absolute rate of homology-directed repair (HDR) and/or to improve the relative rate of HDR compared with non-homologous end joining (NHEJ).
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公开(公告)号:US20180208921A1
公开(公告)日:2018-07-26
申请号:US15870659
申请日:2018-01-12
Applicant: The General Hospital Corporation
Inventor: J. Keith Joung , James Angstman , Jeffry D. Sander , Morgan Maeder , Shengdar Tsai
IPC: C12N15/10 , C07K14/005 , C12N9/22 , C12N9/96 , C12N15/85 , C12N9/02 , C12N15/63 , C12N9/16 , C07K14/195 , C12N9/10 , C12N15/01
CPC classification number: C12N15/907 , C07K14/005 , C07K14/195 , C07K2319/00 , C07K2319/01 , C07K2319/80 , C12N9/0071 , C12N9/1007 , C12N9/16 , C12N9/22 , C12N9/96 , C12N15/01 , C12N15/102 , C12N15/1031 , C12N15/11 , C12N15/63 , C12N15/85 , C12N2310/20 , C12N2710/00033 , C12N2770/00033 , C12N2800/80 , C12Y114/11 , C12Y201/01 , C12Y301/00 , C12Y301/21004
Abstract: Methods for increasing specificity of RNA-guided genome editing, e.g., editing using CRISPR/Cas9 systems.
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公开(公告)号:US09885033B2
公开(公告)日:2018-02-06
申请号:US14776620
申请日:2014-03-14
Applicant: The General Hospital Corporation
Inventor: J. Keith Joung , James Angstman , Jeffry D. Sander , Morgan Maeder , Shengdar Tsai
IPC: C07H21/02 , C12N15/00 , A61K48/00 , C12N15/10 , C12N9/22 , C12N15/63 , C12N15/85 , C07K14/005 , C07K14/195 , C12N9/02 , C12N9/10 , C12N9/16 , C12N9/96 , C12N15/01
CPC classification number: C12N15/102 , C07K14/005 , C07K14/195 , C07K2319/00 , C07K2319/01 , C07K2319/80 , C12N9/0071 , C12N9/1007 , C12N9/16 , C12N9/22 , C12N9/96 , C12N15/01 , C12N15/1031 , C12N15/11 , C12N15/63 , C12N15/85 , C12N2310/20 , C12N2710/00033 , C12N2770/00033 , C12N2800/80 , C12Y114/11 , C12Y201/01 , C12Y301/00 , C12Y301/21004
Abstract: Methods for increasing specificity of RNA-guided genome editing, e.g., editing using CRISPR/Cas9 systems.
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19.
公开(公告)号:US20160024524A1
公开(公告)日:2016-01-28
申请号:US14776620
申请日:2014-03-14
Applicant: THE GENERAL HOSPITAL CORPORATION
Inventor: J. Keith Joung , James Angstman , Jeffry D. Sander , Morgan Maeder , Shengdar Tsai
CPC classification number: C12N15/102 , C07K14/005 , C07K14/195 , C07K2319/00 , C07K2319/01 , C07K2319/80 , C12N9/0071 , C12N9/1007 , C12N9/16 , C12N9/22 , C12N9/96 , C12N15/01 , C12N15/1031 , C12N15/11 , C12N15/63 , C12N15/85 , C12N2310/20 , C12N2710/00033 , C12N2770/00033 , C12N2800/80 , C12Y114/11 , C12Y201/01 , C12Y301/00 , C12Y301/21004
Abstract: Methods for increasing specificity of RNA-guided genome editing, e.g., editing using CRISPR/Cas9 systems.
Abstract translation: 提高RNA指导基因组编辑特异性的方法,例如使用CRISPR / Cas9系统进行编辑。
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20.
公开(公告)号:US20130323220A1
公开(公告)日:2013-12-05
申请号:US13838520
申请日:2013-03-15
Applicant: THE GENERAL HOSPITAL CORPORATION
Inventor: J. Keith Joung , Morgan Maeder , James Angstman
IPC: C12N9/02
CPC classification number: C12N9/0071 , C07K2319/80 , C07K2319/81
Abstract: Fusion proteins comprising a DNA binding domain, e.g., a TAL effector repeat array or zinc finger, and a catalytic domain comprising a sequence that catalyzes hydroxylation of methylated cytosines in DNA, and methods of use thereof.
Abstract translation: 包含DNA结合结构域的融合蛋白,例如TAL效应子重复阵列或锌指,以及包含催化DNA中的甲基化胞嘧啶的羟基化的序列的催化结构域及其使用方法。
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