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公开(公告)号:US10385329B2
公开(公告)日:2019-08-20
申请号:US15786223
申请日:2017-10-17
Applicant: Life Technologies Corporation
Inventor: John Davidson , Theo Nikiforov , Guobin Luo
Abstract: In some embodiments, the disclosure relates generally to methods as well as related compositions, systems, kits and apparatus comprising linking proteins to target compounds and/or to locations of interest using tethers. For example, the tether can be used to link the protein to a target compound, for example, to link an enzyme to a substrate. Similarly, the tether can be used to link the protein at or near a desired location on a surface. In one group of embodiments, the tether includes a polynucleotide and the target compound or location on the surface includes another polynucleotide that is capable of hybridizing to the tether. In such embodiments, the tether can be used to link the protein to the target compound or location using nucleic acid hybridization.
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公开(公告)号:US20180305673A1
公开(公告)日:2018-10-25
申请号:US15959839
申请日:2018-04-23
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Peter Vander Horn , Theo Nikiforov , Guobin Luo , Mindy Landes , Daniel Mazur , Eileen Tozer , Tommie Lloyd Lincecum
IPC: C12N9/12 , C12Q1/686 , C12Q1/6844
CPC classification number: C12N9/1252 , C12Q1/6846 , C12Q1/686 , C12Y207/07007
Abstract: The present disclosure provides compositions, methods, kits, systems and apparatus that are useful for nucleic acid polymerization. In particular, modified polymerases and biologically active fragment thereof are provided that allow for nucleic acid amplification. In one aspect, the disclosure relates to modified polymerases useful for nucleic acid sequencing, genotyping, copy number variation analysis, paired-end sequencing and other forms of genetic analysis. In some aspects, the disclosure relates to modified polymerases useful for the generation of nucleic acid libraries or nucleic acid templates for use in various downstream processes. In some aspects, the disclosure relates to the identification of homologous amino acid mutations that can be transferred across classes or families of polymerases to provide novel polymerases with altered catalytic properties. In some aspects, the disclosure provides modified polymerases having enhanced catalytic properties as compared to a reference polymerase.
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公开(公告)号:US09695471B2
公开(公告)日:2017-07-04
申请号:US14584829
申请日:2014-12-29
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Joseph Beechem , Theo Nikiforov , Vi-En Choong , Xinzhan Peng , Guobin Luo , Cheng-Yao Chen , Michael Previte
CPC classification number: C12Q1/6869 , C07H19/20 , C12N9/1241 , C12N9/1252 , C12N9/96 , C12Q1/6818 , C12Y207/07 , C12Y207/07007 , G01N21/6428 , G01N33/582 , G01N2021/6432
Abstract: Provided herein are systems and methods for nucleotide incorporation reactions. The systems comprise polymerases having altered nucleotide incorporation kinetics and are linked to an energy transfer donor moiety, and nucleotide molecules linked with at least one energy transfer acceptor moiety. The donor and acceptor moieties undergo energy transfer when the polymerase and nucleotide are proximal to each other during nucleotide binding and/or nucleotide incorporation. As the donor and acceptor moieties undergo energy transfer, they generate an energy transfer signal which can be associated with nucleotide binding or incorporation. Detecting a time sequence of the generated signals, or the change in the signals, can be used to determine the order of the incorporated nucleotides, and can therefore be used to deduce the sequence of the target molecule.
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公开(公告)号:US20160208318A1
公开(公告)日:2016-07-21
申请号:US14991230
申请日:2016-01-08
Applicant: Life Technologies Corporation
Inventor: Peter Vander Horn , Cheng-Yao Chen , Guobin Luo , Michael Previte , Jamshid Temirov , Theo Nikiforov , Zhaohui Zhou , Hongye Sun , Yufang Wang , Stefanie Yukiko Nishimura , Hongyi Wang , Marian Peris , Barnett Rosenblum , Michael Phelan
IPC: C12Q1/68
CPC classification number: C12N9/1252 , C12Q1/68 , C12Q1/6804 , C12Q1/6818 , C12Q1/6827 , C12Q1/6869 , C12Q1/6872 , C12Y207/07007 , G01N2500/00 , C12Q2565/632 , C12Q2563/137 , C12Q2563/107 , C12Q2565/30 , C12Q2537/157
Abstract: Provided herein are compositions and systems for use in polymerase-dependent, nucleotide transient-binding methods. The methods are useful for deducing the sequence of a template nucleic acid molecule and single nucleotide polymorphism (SNP) analyses. The methods rely on the fact that the polymerase transient-binding time for a complementary nucleotide is longer compared to that of a non-complementary nucleotide. The labeled nucleotides transiently-binds the polymerase in a template-dependent manner, but does not incorporate. The methods are conducted under any reaction condition that permits transient binding of a complementary or non-complementary nucleotide to a polymerase, and inhibits nucleotide incorporation.
Abstract translation: 本文提供了用于聚合酶依赖性核苷酸瞬变结合方法的组合物和系统。 该方法可用于推导模板核酸分子和单核苷酸多态性(SNP)分析的序列。 该方法依赖于与非互补核苷酸相比,互补核苷酸的聚合酶瞬时结合时间更长的事实。 标记的核苷酸以模板依赖的方式瞬时结合聚合酶,但不包括在内。 所述方法在允许互补或非互补核苷酸与聚合酶短暂结合并且抑制核苷酸掺入的任何反应条件下进行。
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25.
公开(公告)号:US20150368626A1
公开(公告)日:2015-12-24
申请号:US14754203
申请日:2015-06-29
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Peter Vander Horn , Theo Nikiforov , Guobin Luo , Mindy Landes , Daniel Mazur , Eileen Tozer , Tommie Lincecum
CPC classification number: C12N9/1252 , C12Q1/6846 , C12Q1/686 , C12Y207/07007
Abstract: The present disclosure provides compositions, methods, kits, systems and apparatus that are useful for nucleic acid polymerization. In particular, modified polymerases and biologically active fragment thereof are provided that allow for nucleic acid amplification. In one aspect, the disclosure relates to modified polymerases useful for nucleic acid sequencing, genotyping, copy number variation analysis, paired-end sequencing and other forms of genetic analysis. In some aspects, the disclosure relates to modified polymerases useful for the generation of nucleic acid libraries or nucleic acid templates for use in various downstream processes. In some aspects, the disclosure relates to the identification of homologous amino acid mutations that can be transferred across classes or families of polymerases to provide novel polymerases with altered catalytic properties. In some aspects, the disclosure provides modified polymerases having enhanced catalytic properties as compared to a reference polymerase.
Abstract translation: 本公开提供了可用于核酸聚合的组合物,方法,试剂盒,系统和装置。 特别地,提供了允许核酸扩增的修饰的聚合酶及其生物活性片段。 一方面,本公开涉及可用于核酸测序,基因分型,拷贝数变异分析,配对末端测序和其他形式遗传分析的修饰聚合酶。 在一些方面,本公开涉及可用于产生用于各种下游过程的核酸文库或核酸模板的修饰聚合酶。 在一些方面,本公开涉及可以跨聚合酶类或家族转移的同源氨基酸突变的鉴定,以提供具有改变的催化性质的新型聚合酶。 在一些方面,本公开提供与参考聚合酶相比具有增强的催化性质的修饰聚合酶。
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26.
公开(公告)号:US20150080228A1
公开(公告)日:2015-03-19
申请号:US14485282
申请日:2014-09-12
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Guobin Luo , Marina Sedova , David Light , Ryan Jones , Mohammad Alanjary
IPC: C12Q1/68
CPC classification number: C12Q1/6874 , C12Q1/6806 , C12Q2527/125 , C12Q2563/149 , C12Q2563/137 , C12Q2535/122
Abstract: A method of sequencing a nucleic acid strand includes receiving particles having nucleic acid strands coupled to a polymer matrix, exposing the particles to a solution including a condensing agent, and applying the particles to a surface, the particles depositing on the surface.
Abstract translation: 对核酸链进行测序的方法包括接收具有与聚合物基质偶联的核酸链的颗粒,将颗粒暴露于包含缩合剂的溶液中,并将颗粒施用于表面,颗粒沉积在表面上。
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