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公开(公告)号:US20240360503A1
公开(公告)日:2024-10-31
申请号:US18573770
申请日:2023-03-15
申请人: Illumina, Inc.
发明人: Gery VESSERE , Aathavan KARUNAKARAN , Come RACZY , Jeff GAU , Jonathan BOUTELL , Roberto ANDRES , Michael BUREK , Eli CARRAMI
IPC分类号: C12Q1/6874 , C12Q1/6806 , G16B40/10
CPC分类号: C12Q1/6874 , C12Q1/6806 , G16B40/10
摘要: The invention relates to methods for use in nucleic acid sequencing, in particular methods for use in concurrent sequencing.
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公开(公告)号:US20240360502A1
公开(公告)日:2024-10-31
申请号:US18769519
申请日:2024-07-11
IPC分类号: C12Q1/6869 , B01D57/02 , G01N33/487
CPC分类号: C12Q1/6869 , B01D57/02 , G01N33/48721
摘要: The present disclosure provides method and systems for improving nanopore-based analyses of polymers. The disclosure provides methods for selectively modifying one or more monomeric subunit(s) of a kind a pre-analyte polymer that results polymer analyte with a modified subunit. The polymer analyte produces a detectable signal in a nanopore-based system. The detectable signal, and/or its deviation from a reference signal, indicates the location of the modified subunit in the polymer analyte and, thus, permits the identification of the subunit at that location in the original pre-analyte polymer.
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公开(公告)号:US12111262B2
公开(公告)日:2024-10-08
申请号:US17419375
申请日:2020-06-25
申请人: ILLUMINA, INC.
发明人: Arvin Emadi , Arnaud Rival , Fabien Abeille , Ali Agah , Craig Ciesla , Aathavan Karunakaran
IPC分类号: G01N21/64 , G01N15/1434 , G01N21/05 , G02B6/12 , G02B6/124 , H01L27/148
CPC分类号: G01N21/645 , G02B6/124 , H01L27/14825 , G01N15/1436 , G01N2021/058 , G01N2021/6482 , G01N2021/6484 , G02B2006/12107 , G02B2006/12138
摘要: Provided herein include various examples of an apparatus, flow cells that include these examples of the apparatus, and methods of making these examples of the apparatus. The apparatus can include a molding layer over a substrate and covering sides of a light detection device. The molding layer comprises a first region and a second region, which, with the active surface of the light detection device, form a contiguous surface. A waveguide integration layer is between the contiguous surface and a waveguide. The waveguide integration layer comprises optical coupling structures over the first and second regions, to optically couple light waves from a light source to the waveguide. The waveguide utilizes the light waves to excite light sensitive materials in nanowells. A nanostructure layer over the waveguide comprises the nanowells. Each nanowell shares a vertical axis with a location on the active surface of the light detection device.
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公开(公告)号:US20240327909A1
公开(公告)日:2024-10-03
申请号:US18618263
申请日:2024-03-27
申请人: Illumina, Inc.
发明人: Xiaolin Wu , Pietro Gatti Lafranconi , Timothy Beech , Carlo Bravin , Benedict Mackworth , Thomas Tongue , Philip Balding
IPC分类号: C12Q1/6874 , G01N33/58
CPC分类号: C12Q1/6874 , G01N33/582
摘要: Embodiments of the present application relates to methods and compositions for increasing fluorescent dye signal intensity during sequencing by synthesis. In particular, the compositions and methods described herein involve the use aqueous scan mixtures including one or more water-soluble macrocycles that can form host-guest complexes with the dyes.
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公开(公告)号:US12104281B2
公开(公告)日:2024-10-01
申请号:US17250848
申请日:2019-11-25
申请人: ILLUMINA, INC.
IPC分类号: C40B50/06 , C12Q1/6806 , C12Q1/6834
CPC分类号: C40B50/06 , C12Q1/6806 , C12Q1/6834 , C12Q2563/179
摘要: Embodiments of systems, methods, and compositions provided herein relate to methods of simultaneously analyzing multiple analytes in a single sample using a single assay. Some embodiments relate to simultaneous analysis of DNA and RNA in a single sample, for example, to the simultaneous generation of DNA and RNA libraries.
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公开(公告)号:US12100125B2
公开(公告)日:2024-09-24
申请号:US18481442
申请日:2023-10-05
申请人: Illumina, Inc.
发明人: Robert Langlois , Paul Belitz
IPC分类号: G06T5/80 , G01B11/16 , G01N21/64 , G02B21/00 , G06T3/02 , G06V10/24 , G06V20/69 , H04N1/387 , H04N1/401 , H04N1/409 , H04N25/61
CPC分类号: G06T5/80 , G01B11/16 , G01N21/6456 , G02B21/00 , G06T3/02 , G06V10/24 , G06V20/695 , H04N1/387 , H04N1/401 , H04N1/409 , H04N25/61 , G06T2207/30072 , G06V10/247
摘要: Techniques are described for dynamically correcting image distortion during imaging of a patterned sample having repeating spots. Different sets of image distortion correction coefficients may be calculated for different regions of a sample during a first imaging cycle of a multicycle imaging run and subsequently applied in real time to image data generated during subsequent cycles. In one implementation, image distortion correction coefficients may be calculated for an image of a patterned sample having repeated spots by: estimating an affine transform of the image; sharpening the image; and iteratively searching for an optimal set of distortion correction coefficients for the sharpened image, where iteratively searching for the optimal set of distortion correction coefficients for the sharpened image includes calculating a mean chastity for spot locations in the image, and where the estimated affine transform is applied during each iteration of the search.
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公开(公告)号:USD1042875S1
公开(公告)日:2024-09-17
申请号:US29865262
申请日:2022-07-15
摘要: FIG. 1 is a front, right top perspective view of a sequencing instrument illustrating our new design;
FIG. 2 is a front, right bottom perspective view of the design of FIG. 1;
FIG. 3 is a front, left top perspective view of the design of FIG. 1;
FIG. 4 is a front, left bottom perspective view of the design of FIG. 1;
FIG. 5 is an enlarged partial, front, right top perspective view of the design of FIG. 1;
FIG. 6 is an enlarged partial, front, left top perspective view of the design of FIG. 1;
FIG. 7 is an enlarged partial, front, right bottom perspective view of the design of FIG. 1;
FIG. 8 is an enlarged partial, front, left bottom perspective view of the design of FIG. 1;
FIG. 9 is an enlarged partial, front, top perspective view of the design of FIG. 1;
FIG. 10 is an enlarged partial, front, bottom perspective view of the design of FIG. 1;
FIG. 11 is a rear, left top perspective view of the design of FIG. 1;
FIG. 12 is a rear, left below perspective view of the design of FIG. 1;
FIG. 13 is a rear, right top perspective view of the design of FIG. 1;
FIG. 14 is a rear, right bottom perspective view of the design of FIG. 1;
FIG. 15 is a front elevational view of the design of FIG. 1;
FIG. 16 is a right side elevational view of the design of FIG. 1;
FIG. 17 is a left side elevational view of the design of FIG. 1;
FIG. 18 is a rear elevational view of the design of FIG. 1;
FIG. 19 is a top plan view of the design of FIG. 1; and,
FIG. 20 is a bottom plan view of the design of FIG. 1.
The even length broken lines shown in the drawings illustrate portions of the sequencing instrument that form no part of the claimed design. The dot-dash cutaway lines shown in FIGS. 5 through 10 represent the boundaries of the enlarged views and form no part of the claimed design.
The dash-dot lines in the drawings represent a boundary of the claimed design.-
公开(公告)号:US20240294904A1
公开(公告)日:2024-09-05
申请号:US18610717
申请日:2024-03-20
申请人: Illumina, Inc.
IPC分类号: C12N15/10 , C12N9/22 , C12Q1/6806
CPC分类号: C12N15/1093 , C12N9/22 , C12Q1/6806
摘要: Embodiments provided herein relate to methods and compositions for next generation sequencing. Some embodiments include the preparation of a template library from a target nucleic acid using one-sided transposition, sequencing the template library, and capturing the contiguity information.
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公开(公告)号:US12080385B2
公开(公告)日:2024-09-03
申请号:US18237187
申请日:2023-08-23
申请人: Illumina, Inc.
CPC分类号: G16B50/50 , H03M7/3071 , H03M7/6011
摘要: Methods, systems, and computer programs for compressing nucleic acid sequence data. A method can include obtaining nucleic acid sequence data representing: (i) a read sequence, and (ii) a plurality of quality scores, determining whether the read sequence includes at least one “N” base, based on a determination that the read sequence includes at least one “N” base, generating, by one or more computers, a first encoding data set by using a first encoding process to encode each set of four quality scores of the read sequence into a single byte of memory, and using a second encoding process to encode the first encoded data set, thereby compressing the data to be compressed.
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10.
公开(公告)号:US20240287504A1
公开(公告)日:2024-08-29
申请号:US18549344
申请日:2022-03-08
发明人: Andrew Kennedy , Sarah Shultzaberger , Emma Bell , Oliver Miller , Kim Schneider , Esther Musgrave-Brown , Niall Gormley , Andrew Slatter , Feng Chen
IPC分类号: C12N15/10
CPC分类号: C12N15/1065
摘要: Genomic library preparation using Cas-gRNA RNPs, and targeted epigenetic assays, are provided herein. Some compositions include, from a first species, substantially only single-stranded polynucleotides; from a second species, substantially only double-stranded polynucleotides; and amplification primers ligated to ends of the second double-stranded polynucleotides and substantially not ligated to any ends of the first double-stranded polynucleotides. Some compositions include first and second molecules of a target polynucleotide having a sequence, the first molecule having a first end at a first subsequence, the second molecule having a first end at a second subsequence, wherein the first subsequence only partially overlaps with the second subsequence. Some examples provide a composition that includes a target polynucleotide and a first fusion protein including a Cas-gRNA RNP coupled to a transposase having an amplification adapter coupled thereto. The Cas-gRNA RNP may be hybridized to a subsequence in the target polynucleotide.
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