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公开(公告)号:US06828550B2
公开(公告)日:2004-12-07
申请号:US10459791
申请日:2003-06-12
申请人: Richard Griffey , Steven Hofstadler
发明人: Richard Griffey , Steven Hofstadler
IPC分类号: B01D5944
CPC分类号: H01J49/0077
摘要: Novel methods and apparatuses for mass spectrometry are disclosed wherein a time slice of ions are selectively accumulated in an ion reservoir of a mass spectrometer and subsequently are allowed to undergo an ion-molecule reaction with a reactive species or are dissociated with coherent radiation prior to mass analysis. These methods and apparatuses are amenable to mass spectrometric analysis of singly or multiply charaged ions of peptides, proteins, carbohydrates, oligonucleotides, nucleic acids and small molecules as prepared by combinatorial or classical medicinal chemistry.
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12.
公开(公告)号:US06770486B1
公开(公告)日:2004-08-03
申请号:US09499875
申请日:2000-02-08
IPC分类号: G01N2400
CPC分类号: H01J49/0031 , H01J49/00 , Y10T436/24
摘要: The present invention provides methods for the identification ligand compounds that bind to target molecules such as proteins or structured RNA with as little as millimolar (mM) affinity using mass spectrometry. The methods may be used to determine the mode of binding interaction between two or more of these ligand compounds to the target as well as their relative affinities. Also provided are methods for designing compounds having greater affinity to a target molecule by identifying two or more ligands using mass spectrometry methods of the invention and linking the ligands together to form a novel compound.
摘要翻译: 本发明提供了使用质谱法鉴定与目标分子如蛋白质或结构化RNA结合至少达到毫摩尔(mM)亲和力的配体化合物的方法。 这些方法可用于确定两种或多种这些配体化合物与靶标之间的结合相互作用的模式以及它们的相对亲和力。 还提供了通过使用本发明的质谱方法鉴定两个或更多个配体并将配体连接在一起形成新化合物来设计对靶分子具有更高亲和力的化合物的方法。
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公开(公告)号:US08563250B2
公开(公告)日:2013-10-22
申请号:US11682259
申请日:2007-03-05
申请人: David J. Ecker , Richard H. Griffey , Rangarajan Sampath , Steven Hofstadler , John McNeil , Stanley T. Crooke , James C. Hannis
发明人: David J. Ecker , Richard H. Griffey , Rangarajan Sampath , Steven Hofstadler , John McNeil , Stanley T. Crooke , James C. Hannis
CPC分类号: C12Q1/689 , C12Q1/6813 , C12Q1/6858 , C12Q1/686 , C12Q1/6888 , C12Q2600/156 , Y02A50/59 , Y02A50/60 , Y02A90/24 , C12Q2565/627 , C12Q2545/113 , C12Q2563/167
摘要: The present invention provides methods for rapid forensic investigations by identification of bioagents associated with biowarfare and acts of terrorism or crime. The methods are also useful for epidemiological investigations by genotyping of bioagents.
摘要翻译: 本发明提供了通过识别与生物武器相关的生物标签和恐怖主义或犯罪行为进行快速法医调查的方法。 该方法也可用于通过基因分型生物学的流行病学调查。
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公开(公告)号:US08211636B2
公开(公告)日:2012-07-03
申请号:US10608354
申请日:2003-06-27
CPC分类号: C12Q1/6816 , B01J2219/00702 , B01J2219/00722 , C12Q1/6806 , C12Q1/6811 , C40B40/06 , H01J49/004 , Y10T436/24 , C12Q2565/627 , C12Q2525/101 , C12Q2565/133 , C12Q2525/121 , C12Q2565/607
摘要: The present invention provides methods for the determination of the structure of biomolecular targets, as well as the site and nature of the interaction between ligands and biomolecular targets. The present invention also provides methods for the determination of the relative affinity of a ligand for the biomolecular target it interacts with. Also provided are methods for screening ligand or combinatorial libraries of compounds against one or more than one biological target molecules. The methods of the invention also allow determination of the relative binding affinity of combinatorial and other compounds for a biomolecular target. The present invention further provides methods for the use of mass modifying tags for screening multiple biomolecular targets. In a preferred embodiment, ligands which have great specificity and affinity for molecular interaction sites on biomolecules, especially RNA can be identified. In preferred embodiments, such identification can be made simultaneously with libraries of ligands.
摘要翻译: 本发明提供了用于确定生物分子靶标的结构的方法,以及配体和生物分子靶标之间的相互作用的位点和性质。 本发明还提供了确定配体与其相互作用的生物分子靶的相对亲和力的方法。 还提供了用于筛选针对一种或多于一种生物靶分子的化合物的配体或组合文库的方法。 本发明的方法还允许确定组合和其它化合物对于生物分子靶标的相对结合亲和力。 本发明还提供使用质量修饰标签筛选多个生物分子靶标的方法。 在优选的实施方案中,可以鉴定对生物分子,特别是RNA上的分子相互作用位点具有极大特异性和亲和力的配体。 在优选的实施方案中,这种鉴定可以与配体文库同时进行。
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15.
公开(公告)号:US08188011B1
公开(公告)日:2012-05-29
申请号:US09573479
申请日:2000-05-16
IPC分类号: C40B30/00
CPC分类号: C12Q1/68 , C12Q2565/627 , Y10T436/24
摘要: The present invention provides methods for the identification ligand compounds that bind to target molecules such as proteins or structured RNA with as little as millimolar (mM) affinity using mass spectrometry. The methods may be used to determine the mode of binding interaction between two or more of these ligand compounds to the target as well as their relative affinities. Also provided are methods for designing compounds having greater affinity to a target molecule by identifying two or more ligands using mass spectrometry methods of the invention and linking the ligands together to form a novel compound.
摘要翻译: 本发明提供了使用质谱法鉴定与目标分子如蛋白质或结构化RNA结合至少达到毫摩尔(mM)亲和力的配体化合物的方法。 这些方法可用于确定两种或多种这些配体化合物与靶标之间的结合相互作用的模式以及它们的相对亲和力。 还提供了通过使用本发明的质谱方法鉴定两个或更多个配体并将配体连接在一起形成新化合物来设计对靶分子具有更高亲和力的化合物的方法。
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公开(公告)号:US20060275788A1
公开(公告)日:2006-12-07
申请号:US11331978
申请日:2006-01-13
CPC分类号: C12Q1/689 , C12Q1/686 , C12Q2600/156 , C12Q2565/627
摘要: Method for detecting and identifying unknown bioagents, including bacteria, viruses and the like, by a combination of nucleic acid amplification and molecular weight determination using primers which hybridize to conserved sequence regions of nucleic acids derived from a bioagent and which bracket variable sequence regions that uniquely identify the bioagent. The result is a “base composition signature” (BCS) which is then matched against a database of base composition signatures, by which the bioagent is identified.
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公开(公告)号:US20060275749A1
公开(公告)日:2006-12-07
申请号:US11210516
申请日:2005-08-24
CPC分类号: C12Q1/701 , C12Q1/6888
摘要: Oligonucleotide primers and compositions and kits containing the same for rapid identification of orthopoxviruses by amplification of a segment of viral nucleic acid followed by molecular mass analysis are provided.
摘要翻译: 提供了通过扩增一段病毒核酸,随后进行分子质量分析的寡核苷酸引物和包含其的组合物和试剂盒,用于快速鉴定正痘病毒。
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公开(公告)号:US07108974B2
公开(公告)日:2006-09-19
申请号:US10156608
申请日:2002-05-24
CPC分类号: C12Q1/689 , C12Q1/686 , C12Q2600/156 , C12Q2565/627
摘要: Method for detecting and identifying unknown bioagents, including bacteria, viruses and the like, by a combination of nucleic acid amplification and molecular weight determination using primers which hybridize to conserved sequence regions of nucleic acids derived from a bioagent and which bracket variable sequence regions that uniquely identify the bioagent. The result is a “base composition signature” (BCS) which is then matched against a database of base composition signatures, by which the bioagent is identified.
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公开(公告)号:US20050266411A1
公开(公告)日:2005-12-01
申请号:US10853660
申请日:2004-05-25
申请人: Steven Hofstadler , Thomas Hall , David Ecker , Lawrence Blyn , Mark Eshoo , Vivek Samant , Neill White
发明人: Steven Hofstadler , Thomas Hall , David Ecker , Lawrence Blyn , Mark Eshoo , Vivek Samant , Neill White
IPC分类号: C12Q1/68 , G01N27/447 , G01N33/48 , G01N33/50 , G06F19/00
CPC分类号: G01N27/62 , C12Q1/683 , C12Q1/6846 , G01N27/447 , G16B50/00 , C12Q2565/627 , C12Q2521/301
摘要: The present invention provides methods for rapid forensic analysis of mitochondrial DNA by amplification of a segment of mitochondrial DNA containing restriction sites, digesting the mitochondrial DNA segments with restriction enzymes, determining the molecular masses of the restriction fragments and comparing the molecular masses with the molecular masses of theoretical restriction digests of known mitochondrial DNA sequences stored in a database.
摘要翻译: 本发明提供了通过扩增含有限制性位点的线粒体DNA片段,用限制酶消化线粒体DNA片段,确定限制性片段的分子量并将分子量与分子量进行比较的线粒体DNA的快速法医分析方法 已知线粒体DNA序列的理论限制性消化存储在数据库中。
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公开(公告)号:US20050266397A1
公开(公告)日:2005-12-01
申请号:US10829826
申请日:2004-04-22
申请人: David Ecker , Steven Hofstadler , Rangarajan Sampath , Lawrence Blyn , Thomas Hall , Christian Massire
发明人: David Ecker , Steven Hofstadler , Rangarajan Sampath , Lawrence Blyn , Thomas Hall , Christian Massire
IPC分类号: C12N20060101 , C12N15/00 , C12Q1/68 , C12Q1/70
CPC分类号: C12Q1/701 , C12N2770/20011 , Y10T436/24
摘要: The present invention provides a method for rapid identification and quantitation of bacteria by amplification of a segment of bacterial nucleic acid followed by analysis by mass spectrometry. The compositions provide for characterization of the molecular masses and base compositions of bacterial nucleic acids which are used to rapidly identify bacteria.
摘要翻译: 本发明提供了通过扩增细菌核酸片段,然后通过质谱法分析来快速鉴定和定量细菌的方法。 该组合物提供用于快速鉴定细菌的细菌核酸的分子量和碱性组成的表征。
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