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公开(公告)号:US09951355B2
公开(公告)日:2018-04-24
申请号:US14557188
申请日:2014-12-01
Applicant: Genomatica, Inc.
Inventor: Anthony P. Burgard , Mark J. Burk , Robin E. Osterhout , Priti Pharkya
CPC classification number: C12P7/42 , C12N9/0008 , C12N9/1096 , C12N9/88 , C12N9/90 , C12P7/40 , C12Y102/01 , C12Y206/01022 , C12Y403/01 , C12Y504/99002
Abstract: The invention provides a non-naturally occurring microbial organism having a 2-hydroxyisobutyric acid, 3-hydroxyisobutyric acid or methacrylic acid pathway. The microbial organism contains at least one exogenous nucleic acid encoding an enzyme in a 2-hydroxyisobutyric acid, 3-hydroxyisobutyric acid or methacrylic acid pathway. The invention additionally provides a method for producing 2-hydroxyisobutyric acid, 3-hydroxyisobutyric acid or methacrylic acid. The method can include culturing a 2-hydroxyisobutyric acid, 3-hydroxyisobutyric acid or methacrylic acid producing microbial organism expressing at least one exogenous nucleic acid encoding a 2-hydroxyisobutyric acid, 3-hydroxyisobutyric acid or methacrylic acid pathway enzyme in a sufficient amount and culturing under conditions and for a sufficient period of time to produce 2-hydroxyisobutyric acid, 3-hydroxyisobutyric acid or methacrylic acid.
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公开(公告)号:US09932611B2
公开(公告)日:2018-04-03
申请号:US14059285
申请日:2013-10-21
Applicant: Genomatica, Inc.
Inventor: Anthony P. Burgard , Robin E. Osterhout , Stephen J. Van Dien , Cara Ann Tracewell , Priti Pharkya , Stefan Andrae
IPC: C12P7/46 , C07C55/10 , C08G63/00 , C12N15/70 , C12N15/81 , C12P7/24 , C12N9/04 , C12N9/06 , C12N9/10 , C07C59/235 , C12N15/74 , C12N15/77
CPC classification number: C12P7/46 , C07C55/10 , C07C59/235 , C08G63/00 , C12N9/0006 , C12N9/0028 , C12N9/1007 , C12N15/70 , C12N15/74 , C12N15/77 , C12N15/81 , C12N15/815 , C12P7/24 , C12Y101/01244 , C12Y105/0102
Abstract: Provided herein is a non-naturally occurring microbial organism having a methanol metabolic pathway that can enhance the availability of reducing equivalents in the presence of methanol. Such reducing equivalents can be used to increase the product yield of organic compounds produced by the microbial organism, such as succinate. Also provided herein are methods for using such an organism to produce succinate.
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公开(公告)号:US20170088840A1
公开(公告)日:2017-03-30
申请号:US15270578
申请日:2016-09-20
Applicant: Genomatica, Inc.
Inventor: Mark J. BURK , Stephen J. VAN DIEN , Anthony P. BURGARD , Wei NIU
CPC classification number: C12N15/52 , B01D3/002 , C12N9/0006 , C12N9/0008 , C12N9/88 , C12N9/93 , C12N15/70 , C12N15/81 , C12P7/18 , C12P7/42 , C12P7/52 , C12P17/04 , C12Y101/01061 , C12Y102/01076 , C12Y401/01071 , C12Y602/01004 , Y02P20/52
Abstract: The invention provides a non-naturally occurring microbial biocatalyst including a microbial organism having a 4-hydroxybutanoic acid (4-HB) biosynthetic pathway having at least one exogenous nucleic acid encoding 4-hydroxybutanoate dehydrogenase, succinyl-CoA synthetase, CoA-dependent succinic semialdehyde dehydrogenase, or α-ketoglutarate decarboxylase, wherein the exogenous nucleic acid is expressed in sufficient amounts to produce monomeric 4-hydroxybutanoic acid (4-HB). Also provided is a non-naturally occurring microbial biocatalyst including a microbial organism having 4-hydroxybutanoic acid (4-HB) and 1,4-butanediol (BDO) biosynthetic pathways, the pathways include at least one exogenous nucleic acid encoding 4-hydroxybutanoate dehydrogenase, succinyl-CoA synthetase, CoA-dependent succinic semialdehyde dehydrogenase, 4-hydroxybutyrate:CoA transferase, 4-butyrate kinase, phosphotransbutyrylase, α-ketoglutarate decarboxylase, aldehyde dehydrogenase, alcohol dehydrogenase or an aldehyde/alcohol dehydrogenase, wherein the exogenous nucleic acid is expressed in sufficient amounts to produce 1,4-butanediol (BDO). Additionally provided are methods for the production of 4-HB and BDO.
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公开(公告)号:US20170029852A1
公开(公告)日:2017-02-02
申请号:US15303931
申请日:2015-04-14
Applicant: Novamont S.p.A , Genomatica, Inc.
Inventor: Maria DANI , Giuseppe RUGGIERO , Davide PERINI , Alice BIANCHI
IPC: C12P7/18
CPC classification number: C12P7/18
Abstract: Process for the synthesis of 1,4-butanediol comprising fermentation of a culture medium by a microorganism provided with at least one metabolic pathway for the synthesis of 1,4-butanediol and able to use saccharose, in which said culture medium comprises a glucose and saccharose mixture comprising, based on the combined weight of glucose and saccharose, 10-90% by weight of saccharose and 10-90% by weight of glucose.
Abstract translation: 用于合成1,4-丁二醇的方法包括通过提供至少一种用于合成1,4-丁二醇并且能够使用蔗糖的代谢途径的微生物培养培养基的发酵,其中所述培养基包含葡萄糖和 蔗糖混合物,其基于葡萄糖和蔗糖的总重量,10-90重量%的蔗糖和10-90重量%的葡萄糖。
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公开(公告)号:US20170022524A1
公开(公告)日:2017-01-26
申请号:US15056914
申请日:2016-02-29
Applicant: Genomatica, Inc.
Inventor: Mark J. BURK , Stephen J. VAN DIEN , Anthony P. BURGARD , Wei NIU
CPC classification number: C12N15/52 , B01D3/002 , C12N9/0006 , C12N9/0008 , C12N9/88 , C12N9/93 , C12N15/70 , C12N15/81 , C12P7/18 , C12P7/42 , C12P7/52 , C12P17/04 , C12Y101/01061 , C12Y102/01076 , C12Y401/01071 , C12Y602/01004 , Y02P20/52
Abstract: The invention provides a non-naturally occurring microbial biocatalyst including a microbial organism having a 4-hydroxybutanoic acid (4-HB) biosynthetic pathway having at least one exogenous nucleic acid encoding 4-hydroxybutanoate dehydrogenase, succinyl-CoA synthetase, CoA-dependent succinic semialdehyde dehydrogenase, or α-ketoglutarate decarboxylase, wherein the exogenous nucleic acid is expressed in sufficient amounts to produce monomeric 4-hydroxybutanoic acid (4-HB). Also provided is a non-naturally occurring microbial biocatalyst including a microbial organism having 4-hydroxybutanoic acid (4-HB) and 1,4-butanediol (BDO) biosynthetic pathways, the pathways include at least one exogenous nucleic acid encoding 4-hydroxybutanoate dehydrogenase, succinyl-CoA synthetase, CoA-dependent succinic semialdehyde dehydrogenase, 4-hydroxybutyrate:CoA transferase, 4-butyrate kinase, phosphotransbutyrylase, α-ketoglutarate decarboxylase, aldehyde dehydrogenase, alcohol dehydrogenase or an aldehyde/alcohol dehydrogenase, wherein the exogenous nucleic acid is expressed in sufficient amounts to produce 1,4-butanediol (BDO). Additionally provided is a method for the production of 4-HB. The method includes culturing a non-naturally occurring microbial organism having a 4-hydroxybutanoic acid (4-HB) biosynthetic pathway including at least one exogenous nucleic acid encoding 4-hydroxybutanoate dehydrogenase, succinyl-CoA synthetase, CoA-dependent succinic semialdehyde dehydrogenase or α-ketoglutarate decarboxylase under substantially anaerobic conditions for a sufficient period of time to produce monomeric 4-hydroxybutanoic acid (4-HB). Further provided is a method for the production of BDO. The method includes culturing a non-naturally occurring microbial biocatalyst, comprising a microbial organism having 4-hydroxybutanoic acid (4-HB) and 1,4-butanediol (BDO) biosynthetic pathways, the pathways including at least one exogenous nucleic acid encoding 4-hydroxybutanoate dehydrogenase, succinyl-CoA synthetase, CoA-dependent succinic semialdehyde dehydrogenase, 4-hydroxybutyrate:CoA transferase, 4-hydroxybutyrate kinase, phosphotranshydroxybutyrylase, α-ketoglutarate decarboxylase, aldehyde dehydrogenase, alcohol dehydrogenase or an aldehyde/alcohol dehydrogenase for a sufficient period of time to produce 1,4-butanediol (BDO). The 4-HB and/or BDO products can be secreted into the culture medium.
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公开(公告)号:US20160376614A1
公开(公告)日:2016-12-29
申请号:US15173427
申请日:2016-06-03
Applicant: Genomatica, Inc.
Inventor: Robert HASELBECK , John D. TRAWICK , Wei NIU , Anthony P. BURGARD
CPC classification number: C12P7/18 , C12P7/24 , C12P7/42 , C12P13/001 , C12P19/40
Abstract: The invention provides non-naturally occurring microbial organisms comprising a 1,4-butanediol (BDO), 4-hydroxybutyryl-CoA, 4-hydroxybutanal or putrescine pathway comprising at least one exogenous nucleic acid encoding a BDO, 4-hydroxybutyryl-CoA, 4-hydroxybutanal or putrescine pathway enzyme expressed in a sufficient amount to produce BDO, 4-hydroxybutyryl-CoA, 4-hydroxybutanal or putrescine and further optimized for expression of BDO. The invention additionally provides methods of using such microbial organisms to produce BDO, 4-hydroxybutyryl-CoA, 4-hydroxybutanal or putrescine.
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公开(公告)号:US20160355845A1
公开(公告)日:2016-12-08
申请号:US14987489
申请日:2016-01-04
Applicant: Genomatica, Inc.
Inventor: Jun SUN , Anthony P. BURGARD , Priti PHARKYA
CPC classification number: C12P7/04 , C12N9/0006 , C12N9/0008 , C12N9/001 , C12N9/1029 , C12N9/88 , C12N15/52 , C12P7/02 , C12Y101/01001 , C12Y101/01035 , C12Y102/0105 , C12Y203/01009 , C12Y203/01016 , C12Y402/01017
Abstract: The invention provides a non-naturally occurring microbial organism having a microbial organism having at least one exogenous gene insertion and/or one or more gene disruptions that confer production of primary alcohols. A method for producing long chain alcohols includes culturing these non-naturally occurring microbial organisms.
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公开(公告)号:US20160244786A1
公开(公告)日:2016-08-25
申请号:US14869872
申请日:2015-09-29
Applicant: Genomatica, Inc.
Inventor: Mark J. BURK , Anthony P. BURGARD , Robin E. OSTERHOUT , Jun SUN , Priti PHARKYA
Abstract: The invention provides non-naturally occurring microbial organisms having a butadiene or crotyl alcohol pathway. The invention additionally provides methods of using such organisms to produce butadiene or crotyl alcohol.
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公开(公告)号:US09365874B2
公开(公告)日:2016-06-14
申请号:US13887140
申请日:2013-05-03
Applicant: Genomatica, Inc.
Inventor: Mark J. Burk , Priti Pharkya , Stephen J. Van Dien , Anthony P. Burgard , Christophe H. Schilling
IPC: C12P7/40 , C12P7/42 , C12P7/62 , C12N1/21 , C07C51/353 , C07C57/04 , C07C67/08 , C07C67/333 , C12P7/46 , C07C51/38 , C07C67/32
CPC classification number: C07C51/353 , C07C51/38 , C07C57/04 , C07C67/08 , C07C67/32 , C07C67/333 , C12P7/40 , C12P7/46 , C12P7/62 , Y02P20/125 , C07C69/60 , C07C69/54
Abstract: The invention provides a method of producing acrylic acid. The method includes contacting fumaric acid with a sufficient amount of ethylene in the presence of a cross-metathesis transformation catalyst to produce about two moles of acrylic acid per mole of fumaric acid. Also provided is an acrylate ester. The method includes contacting fumarate diester with a sufficient amount of ethylene in the presence of a cross-metathesis transformation catalyst to produce about two moles of acrylate ester per mole of fumarate diester. An integrated process for process for producing acrylic acid or acrylate ester is provided which couples bioproduction of fumaric acid with metathesis transformation. An acrylic acid and an acrylate ester production also is provided.
Abstract translation: 本发明提供了制备丙烯酸的方法。 该方法包括在交叉复分解转化催化剂存在下使富马酸与足够量的乙烯接触,以产生约2摩尔丙烯酸/摩尔富马酸。 还提供了丙烯酸酯。 该方法包括在交叉复分解转化催化剂存在下使富马酸二酯与足够量的乙烯接触,以产生每摩尔富马酸二酯约2摩尔丙烯酸酯。 提供了用于生产丙烯酸或丙烯酸酯的方法的综合方法,其将富马酸的生物生产与易位转化相结合。 还提供丙烯酸和丙烯酸酯生产。
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公开(公告)号:US20160152989A1
公开(公告)日:2016-06-02
申请号:US15016896
申请日:2016-02-05
Applicant: Genomatica, Inc.
Inventor: Robin E. Osterhout
CPC classification number: C12N15/52 , C12N9/0006 , C12N9/1022 , C12N9/1085 , C12N9/88 , C12P7/24 , C12P7/40 , C12P7/44 , C12P7/62 , C12P9/00 , C12Y101/01025 , C12Y101/01267 , C12Y202/01007 , C12Y205/01019 , C12Y205/01054 , C12Y207/01071 , C12Y401/03 , C12Y401/0304 , C12Y402/01 , C12Y402/0101 , C12Y402/03004 , C12Y402/03005
Abstract: The invention provides non-naturally occurring microbial organisms having a (2-hydroxy-3-methyl-4-oxobutoxy)phosphonate pathway, p-toluate pathway, and/or terephthalate pathway. The invention additionally provides methods of using such organisms to produce (2-hydroxy-3-methyl-4-oxobutoxy)phosphonate pathway, p-toluate pathway or terephthalate pathway.
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