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公开(公告)号:US20100130368A1
公开(公告)日:2010-05-27
申请号:US12583658
申请日:2009-08-24
CPC分类号: C12Q1/6874 , B01J2219/00317 , B01J2219/00497 , B01J2219/00527 , B01J2219/00529 , B01J2219/0054 , B01J2219/00572 , B01J2219/00576 , B01J2219/00585 , B01J2219/00596 , B01J2219/00605 , B01J2219/00608 , B01J2219/00612 , B01J2219/00637 , B01J2219/00648 , B01J2219/00659 , B01J2219/00702 , B01J2219/00707 , B01J2219/00722 , C12Q1/6837 , C12Q2525/301 , C40B40/06 , C40B60/14 , C12Q2565/601 , C12Q2565/537 , C12Q2565/507 , C12Q2563/107 , C12Q2525/204
摘要: Provided herein is a method of determining a sequence of a target polynucleotide. The method can include the steps of a) providing a device including an array of relatively short polynucleotides and relatively long polynucleotides immobilised on a surface of a solid support, wherein the relatively long polynucleotides are fragments of the target polynucleotide and wherein the relatively long polynucleotides are separated by a distance of at least 10 nm, whereby parts of the relatively long polynucleotides that extend beyond the relatively short polynucleotides can be individually optically resolved; and b) determining the sequence of the target polynucleotide by detecting incorporation of nucleotides into strands complementary to the relatively long polynucleotide fragments using fluorescent labels associated with the incorporated nucleotides. Also provided is system for determining a sequence of a target polynucleotide. The system can include means for carrying out steps a) and b) of the above method.
摘要翻译: 本文提供了确定靶多核苷酸序列的方法。 该方法可以包括以下步骤:a)提供包含相对短的多核苷酸阵列和固定在固体支持物表面上的相对长的多核苷酸的装置的装置,其中相对长的多核苷酸是靶多核苷酸的片段,其中相对长的多核苷酸是 分离至少10nm的距离,由此延伸超过相对短的多核苷酸的相对长的多核苷酸的部分可以单独地光学拆分; 和b)使用与所掺入的核苷酸相关联的荧光标记,通过检测核苷酸与相对长的多核苷酸片段互补的链中的核苷酸来确定靶多核苷酸的序列。 还提供了用于确定靶多核苷酸序列的系统。 该系统可以包括用于执行上述方法的步骤a)和b)的装置。
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公开(公告)号:US07232656B2
公开(公告)日:2007-06-19
申请号:US10610305
申请日:2003-06-30
CPC分类号: C12Q1/6837 , B01J19/0046 , B01J2219/00274 , B01J2219/00317 , B01J2219/00497 , B01J2219/00527 , B01J2219/00529 , B01J2219/0054 , B01J2219/00572 , B01J2219/00576 , B01J2219/00585 , B01J2219/00596 , B01J2219/00605 , B01J2219/00608 , B01J2219/0061 , B01J2219/00612 , B01J2219/00617 , B01J2219/00626 , B01J2219/0063 , B01J2219/00637 , B01J2219/00648 , B01J2219/00659 , B01J2219/00702 , B01J2219/00707 , B01J2219/00722 , C12Q2525/301 , C40B40/06 , C40B60/14 , C12Q2521/501 , C12Q2565/507
摘要: The invention is directed to a method for analysing genome wide variation in an individual. The method comprises randomly fragmenting the individual's genome and generating sequence reads of multiple bases on all fragments of the individual's genome, aligning the sequence reads generated with a known genomic reference sequence, and analysing variations between the sequence reads derived from the individual's genome and the known genomic reference sequence.
摘要翻译: 本发明涉及用于分析个体中全基因组变异的方法。 该方法包括随机碎片个体的基因组,并在个体基因组的所有片段上生成多个碱基的序列读数,使用已知基因组参考序列生成的序列读数进行比对,并分析源自个体基因组的序列读数与已知 基因组参考序列。
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公开(公告)号:US06787308B2
公开(公告)日:2004-09-07
申请号:US09771708
申请日:2001-01-30
IPC分类号: C12Q168
CPC分类号: C12Q1/6837 , B01J19/0046 , B01J2219/00274 , B01J2219/00317 , B01J2219/00497 , B01J2219/00527 , B01J2219/00529 , B01J2219/0054 , B01J2219/00572 , B01J2219/00576 , B01J2219/00585 , B01J2219/00596 , B01J2219/00605 , B01J2219/00608 , B01J2219/0061 , B01J2219/00612 , B01J2219/00617 , B01J2219/00626 , B01J2219/0063 , B01J2219/00637 , B01J2219/00648 , B01J2219/00659 , B01J2219/00702 , B01J2219/00707 , B01J2219/00722 , C12Q2525/301 , C40B40/06 , C40B60/14 , C12Q2521/501 , C12Q2565/507
摘要: A device comprising an array of molecules immobilised on a solid surface is disclosed, wherein the array has a surface density which allows each molecule to be individually resolved, e.g. by optical microscopy. Therefore, the arrays of the present invention consist of single molecules are more spatially distinct than the arrays of the prior art.
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公开(公告)号:US20110131690A1
公开(公告)日:2011-06-02
申请号:US12864302
申请日:2009-02-02
申请人: Pavel Novak , Chao Li , Andrew Shevchuk , Victor Ostanin , David Klenerman , Yuri Korchev , Gregory Frolenkov , Richard Clarke
发明人: Pavel Novak , Chao Li , Andrew Shevchuk , Victor Ostanin , David Klenerman , Yuri Korchev , Gregory Frolenkov , Richard Clarke
IPC分类号: G01Q60/44
CPC分类号: G01Q60/44 , B82Y35/00 , G01Q10/00 , G01Q10/02 , G01Q10/065
摘要: The subject invention concerns methods for interrogating a surface using scanning ion conductance microscopy (SICM). In one embodiment, a method of the invention comprises the steps of: a) repeatedly bringing a SICM probe into proximity with the surface at discrete, spaced locations in a region of the surface and measuring surface height at each location; b) estimating surface roughness or other characteristic for the region based upon the surface height measurements; and c) repeatedly bringing the probe into proximity with the surface at discrete, spaced locations in the region, the number and location of which is based upon the estimated surface roughness or other characteristic in the region, and obtaining an image of the region with a resolution adapted to the surface roughness or other characteristic.
摘要翻译: 本发明涉及使用扫描离子电导显微镜(SICM)询问表面的方法。 在一个实施例中,本发明的方法包括以下步骤:a)在表面的一个区域中的不连续,间隔的位置处重复使SICM探针与表面接近,并测量每个位置处的表面高度; b)基于表面高度测量来估计区域的表面粗糙度或其他特性; 以及c)在所述区域中的离散的间隔位置处重复地使所述探针靠近所述表面,所述位置的数量和位置基于所估计的表面粗糙度或所述区域中的其它特征,并且获得所述区域的图像 分辨率适应于表面粗糙度或其他特性。
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公开(公告)号:US07763475B2
公开(公告)日:2010-07-27
申请号:US11706654
申请日:2007-02-13
IPC分类号: G01N33/551 , G01N33/552
CPC分类号: C07K1/14
摘要: The present invention is based on the realization that the bonds between a target molecule, or a target molecule attached to a particle, and a surface, can be ruptured by mechanically oscillating the surface at increasing amplitude, leading to detachment of the target molecule or particle from the surface. The required acceleration, and hence force, will depend on a variety of factors, including the mass of the molecule or particle, the nature of the bond to the surface and the geometric shape or size of the target molecule or particle. The present invention may therefore be used to separate or to size different target molecules, or to detect their presence.
摘要翻译: 本发明基于通过以增加的幅度机械振荡表面而导致目标分子或附着于颗粒的靶分子与表面之间的键可能破裂,导致靶分子或颗粒的分离 从表面。 所需的加速度,因而力将取决于多种因素,包括分子或颗粒的质量,与表面的键的性质以及靶分子或颗粒的几何形状或尺寸。 因此,本发明可以用于分离或调整不同的靶分子或检测其存在。
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公开(公告)号:US07297486B2
公开(公告)日:2007-11-20
申请号:US10480702
申请日:2002-06-13
申请人: Yuri Engenievich Korchev , David Klenerman , Christopher Abell , Liming Ying , Andreas Bruckbauer
发明人: Yuri Engenievich Korchev , David Klenerman , Christopher Abell , Liming Ying , Andreas Bruckbauer
IPC分类号: C12Q1/68
CPC分类号: B01J19/0046 , B01J2219/00364 , B01J2219/00371 , B01J2219/00533 , B01J2219/00576 , B01J2219/00608 , B01J2219/00612 , B01J2219/00637 , B01J2219/00722 , B01J2219/00725 , G01Q80/00 , Y10S977/924
摘要: The subject invention pertains to a method for the production of an array of molecules immobilised on a substrate, comprising the deposition of the molecules from a micropipette containing them, onto the substrate, in a liquid environment, wherein the distance of the micropipette from the substrate is controlled in response to the ion current in the liquid. This method is particularly suitable for the deposition of biological molecules. The subject invention also pertains to an array of biological molecules deposited on a substrate.
摘要翻译: 本发明涉及一种用于制备固定在基底上的分子阵列的方法,包括在液体环境中将分子从其含有微量移液管的微量移液管沉积到基底上,其中微量移液管与基底的距离 响应于液体中的离子电流而被控制。 该方法特别适用于沉积生物分子。 本发明还涉及沉积在基底上的生物分子的阵列。
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公开(公告)号:US20070218534A1
公开(公告)日:2007-09-20
申请号:US11706654
申请日:2007-02-13
申请人: David Klenerman , Victor Ostanin , Fedor Dultsev , Matthew Cooper
发明人: David Klenerman , Victor Ostanin , Fedor Dultsev , Matthew Cooper
CPC分类号: C07K1/14
摘要: The present invention is based on the realization that the bonds between a target molecule, or a target molecule attached to a particle, and a surface, can be ruptured by mechanically oscillating the surface at increasing amplitude, leading to detachment of the target molecule or particle from the surface. The required acceleration, and hence force, will depend on a variety of factors, including the mass of the molecule or particle, the nature of the bond to the surface and the geometric shape or size of the target molecule or particle. The present invention may therefore be used to separate or to size different target molecules, or to detect their presence.
摘要翻译: 本发明基于通过以增加的幅度机械振荡表面而导致目标分子或附着于颗粒的靶分子与表面之间的键可能破裂,导致靶分子或颗粒的分离 从表面。 所需的加速度,因而力将取决于多种因素,包括分子或颗粒的质量,与表面的键的性质以及靶分子或颗粒的几何形状或尺寸。 因此,本发明可以用于分离或调整不同的靶分子或检测其存在。
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公开(公告)号:US07195909B2
公开(公告)日:2007-03-27
申请号:US10350892
申请日:2003-01-24
IPC分类号: C12M3/00
CPC分类号: G01N33/54373 , G01N33/5438 , Y10S435/808 , Y10S436/805
摘要: The subject invention pertains to a method for determining the affinity between binding partners, or a property of one of the binding partners dependent on the affinity, comprising the steps of: (i) contacting the binding partners, one of which is immobilised on a surface; (ii) oscillating the surface at increasing amplitude; and (iii) detecting a dissociation event. An analogous method can be used to separate a target analyte from a composition. The subject invention also pertains to an apparatus for determining the affinity between binding partners, and comprises: a surface (10) having one binding partner (16) immobilised thereon; means for oscillating the surface at increasing amplitude; and means (14, 15) for detecting a dissociation event.
摘要翻译: 本发明涉及用于确定结合配偶体之间的亲和力的方法,或者是依赖于亲和力的一种结合配偶体的性质,其包括步骤
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公开(公告)号:US06929934B1
公开(公告)日:2005-08-16
申请号:US10030868
申请日:2000-04-17
IPC分类号: C12M1/34 , G01N1/28 , G01N21/78 , G01N27/416 , G01N33/483 , G01Q10/00 , G01Q30/14 , G01Q60/20 , G01Q60/44 , C12N13/00 , G01N23/00
CPC分类号: G01Q60/44 , G01N33/48728 , G01Q60/20
摘要: The present invention pertains to an apparatus for imaging an object, comprising a probe via which an assay component may be delivered; a sensor to detect ion current; and means for controlling the position of the probe relative to the object in response to the ion current. Such apparatus can be used to image live cells, without affecting them, in solution, e.g., using light, wherein the distance between probe and cell is less than the wavelength of light.
摘要翻译: 本发明涉及一种用于成像对象的装置,包括可以传送测定组件的探针; 用于检测离子电流的传感器; 以及用于响应于离子电流来控制探针相对于物体的位置的装置。 这样的装置可以用于在溶液中(例如使用光)对活细胞进行成像,而不影响它们,其中探针和细胞之间的距离小于光的波长。
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公开(公告)号:US06589727B1
公开(公告)日:2003-07-08
申请号:US09700485
申请日:2000-11-15
IPC分类号: C12Q300
CPC分类号: G01N33/54373 , G01N33/5438 , Y10S435/808 , Y10S436/805
摘要: A method for determining the affinity between binding partners, or a property of one of the binding partners dependent on the affinity, comprising the steps of: (i) contacting the binding partners, one of which is immobilised on a surface; (ii) oscillating the surface at increasing amplitude; and (iii) detecting a dissociation event. An analogous method can be used to separate a target analyte from a composition. The subject invention also pertains to an apparatus for determining the affinity between binding partners, and comprises: a surface (10) having one binding partner (16) immobilised thereon; means for oscillating the surface at increasing amplitude; and a device (14, 15) for detecting a dissociation event.
摘要翻译: 用于确定结合配偶体之间的亲和力或依赖于亲和力的结合配偶体之一的性质的方法,包括以下步骤:(i)使结合伴侣(其中一个固定在表面上);(ii) 表面增大振幅; 和(iii)检测解离事件。可以使用类似的方法从组合物中分离靶分析物。 本发明还涉及用于确定结合配偶体之间的亲和力的装置,并且包括:具有固定在其上的一个结合配偶体(16)的表面(10) 用于以增加的振幅振荡表面的装置; 以及用于检测解离事件的装置(14,15)。
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