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1.
公开(公告)号:US20240361296A1
公开(公告)日:2024-10-31
申请号:US18429862
申请日:2024-02-01
发明人: Meni Wanunu , Alfred Antson , Sandra Greive , Benjamin Cressiot
IPC分类号: G01N33/487 , B81B1/00 , B82Y15/00 , C07K14/005 , C12Q1/6869
CPC分类号: G01N33/48721 , B81B1/002 , C07K14/005 , C12Q1/6869 , B82Y15/00 , C12N2795/00022 , Y10S930/22
摘要: Hybrid nanopores, comprising a protein pore supported within a solid-state membrane, which combine the robust nature of solid-state membranes with the easily tunable and precise engineering of protein nanopores. In an embodiment, a lipid-free hybrid nanopore comprises a water soluble and stable, modified portal protein of the Thermus thermophilus bacteriophage G20c, electrokinetically inserted into a larger nanopore in a solid-state membrane. The hybrid pore is stable and easy to fabricate, and exhibits low peripheral leakage, allowing sensing and discrimination among different types of biomolecules.
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公开(公告)号:US20240360518A1
公开(公告)日:2024-10-31
申请号:US18647340
申请日:2024-04-26
发明人: Charles J. Rosser , Hideki Furuya , Simon Knott , Debiao Li , Xingyu Chen , Touseef Qureshi , Yibin Xie , Takashi Kobayashi , Makito Miyake
IPC分类号: C12Q1/6886 , A61K45/06 , C12Q1/6869 , G16H30/40 , G16H50/20
CPC分类号: C12Q1/6886 , A61K45/06 , C12Q1/6869 , G16H30/40 , G16H50/20 , C12Q2600/112 , C12Q2600/158
摘要: Provided herein are methods based on MRI data with genetic alterations of tumors in the determination of severity and provision of treatment options for bladder cancer patients.
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公开(公告)号:US20240360501A1
公开(公告)日:2024-10-31
申请号:US18737230
申请日:2024-06-07
IPC分类号: C12Q1/6869 , C12Q1/6844
CPC分类号: C12Q1/6869 , C12Q1/6844
摘要: The present disclosure provides compositions, methods, and systems for preparing nucleic acid samples for sequencing, including attaching adapters to template inserts, attaching template nucleic acid molecules to a support, enrichment. Further provided herein are methods of error correction by preserving both strands of a template nucleic acid molecule during amplification.
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公开(公告)号:US12129519B2
公开(公告)日:2024-10-29
申请号:US17886769
申请日:2022-08-12
申请人: Tempus AI, Inc.
发明人: Jason Perera , Taylor Harding , Brittany Mineo , Aly A. Khan , Richard Blidner , Jenna L. Malinauskas
IPC分类号: C12Q1/68 , C07K14/725 , C12Q1/6806 , C12Q1/6869 , C12Q1/6876 , C12Q1/6881
CPC分类号: C12Q1/6869 , C07K14/7051 , C12Q1/6806 , C12Q1/6876 , C12Q1/6881 , C12N2501/515 , C12N2502/1114 , C12Q2600/118 , G01N2800/26
摘要: This present disclosure relates to systems, methods, and compositions useful for profiling T cell receptor (TCR) and B cell receptor (BCR) repertoire using next-generation sequencing (NGS) methods. The present disclosure also relates to systems and methods for diagnosing, treating, or predicting infection, disease, medical conditions, therapeutic outcome, or therapeutic efficacy based on the TCR/BCR profile data from a subject in need thereof.
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5.
公开(公告)号:US20240351029A1
公开(公告)日:2024-10-24
申请号:US18619661
申请日:2024-03-28
发明人: Aleksei Aksimentiev
IPC分类号: B01L3/00 , C12Q1/6869
CPC分类号: B01L3/502715 , C12Q1/6869 , B01L2200/0652 , B01L2300/0663 , B01L2300/0896 , B01L2400/0415
摘要: Aspects of the subject disclosure may include, for example, an apparatus comprising: a membrane, wherein the membrane has a first side and a second side, wherein the membrane has a first pore disposed therein, wherein the first pore extends through the membrane from the first side of the membrane to the second side of the membrane, wherein the membrane has a second pore disposed therein, and wherein the second pore extends through the membrane from the first side of the membrane to the second side of the membrane; a first channel disposed on the first side of the membrane, wherein the first channel is along a first longitudinal axis; a second channel disposed on the first side of the membrane, wherein the second channel is along a second longitudinal axis, and wherein the first channel and the second channel are disposed side by side adjacent to each other; a third channel disposed on the second side of the membrane, wherein the third channel is along a third longitudinal axis, wherein the third channel is in first fluid communication with the first channel via the first pore, and wherein the third channel is in second fluid communication with the second channel via the second pore; and one or more sensors disposed at one or more locations to facilitate sequencing of a molecule that extends from the first channel, through the first pore across at least a portion of the third channel, and through the second pore into the second channel. Additional embodiments are disclosed.
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公开(公告)号:US12123054B2
公开(公告)日:2024-10-22
申请号:US17545226
申请日:2021-12-08
发明人: Eli N. Glezer , Abrehet Abdu , Timothy Looney
IPC分类号: C12Q1/68 , C12Q1/6869
CPC分类号: C12Q1/6869 , C12Q1/6869 , C12Q2535/122
摘要: Provided herein are methods including alternating series of sequencing cycles and dark extension cycles allowing longer read lengths and addressing disadvantages of traditional nucleic acid sequencing protocols.
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公开(公告)号:US20240339178A1
公开(公告)日:2024-10-10
申请号:US18742999
申请日:2024-06-13
申请人: 10x Genomics, Inc.
IPC分类号: G16B40/00 , C12Q1/6809 , C12Q1/6869 , C40B40/06 , G06F18/24 , G06N5/01 , G06N5/025 , G06N7/01 , G16B5/00 , G16B20/00 , G16B25/00 , G16B30/20
CPC分类号: G16B40/00 , C40B40/06 , G06F18/24 , G06N7/01 , G16B5/00 , G16B20/00 , G16B30/20 , B01J2219/00317 , C12Q1/6809 , C12Q1/6869 , G06N5/01 , G06N5/025 , G16B25/00
摘要: Systems and methods for analyzing first and second strings against a ground truth string are provided. A construct representing a plurality of components is obtained, each component for a different portion of the truth string. The construct comprises a plurality of measurement string sampling pools each having an identifier and a corresponding plurality of measurement samplings corresponding to one or two of the components. Each sampling has the identifier and a portion of the first or second string. Samplings are assigned to first, second or third classes when coding a portion of the first string, second string, or both the first and second string. First and second positions are tested for sequence events by calculating a plurality of sequence event models using assumptions on the components having samplings encompassing the first and second positions and class assignments. These assumptions are updated using the calculated models and the models are recalculated.
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公开(公告)号:US20240336973A1
公开(公告)日:2024-10-10
申请号:US18294066
申请日:2022-07-29
申请人: Natera, Inc.
IPC分类号: C12Q1/6886 , C12Q1/6806 , C12Q1/6858 , C12Q1/6869 , G16B20/10 , G16B20/20
CPC分类号: C12Q1/6886 , C12Q1/6806 , C12Q1/6858 , C12Q1/6869 , G16B20/10 , G16B20/20 , C12Q2600/156
摘要: The invention provides methods for preparing a preparation of amplified DNA derived from a biological sample of a pregnant woman useful for identifying neoplasm in a pregnant woman, comprising: (a) isolating cell-free DNA from a biological sample of a pregnant woman comprising a mixture of fetal cell-free DNA and maternal cell-free DNA; (b) preparing a preparation of amplified DNA by performing targeted multiplex amplification on the isolated cell-free DNA to amplify at least 100 polymorphic loci; (c) analyzing the preparation of amplified DNA by sequencing the amplified DNA to obtain sequence reads of the at least 100 polymorphic loci and using the sequence reads to identify copy number variations (CNVs) in fetal and maternal chromosomes or chromosomal segments of interest, and identifying neoplasm in the pregnant woman by the presence of two or more of CNVs in the maternal chromosomes or chromosomal segments of interest.
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9.
公开(公告)号:US20240336966A1
公开(公告)日:2024-10-10
申请号:US18607991
申请日:2024-03-18
IPC分类号: C12Q1/6869
CPC分类号: C12Q1/6869
摘要: A laser-based molecular sequencing system includes a two-dimensional photonic crystal surface emitting laser (PCSEL) array including a plurality of PCSEL devices located in a first layer, each PCSEL device oriented in a direction perpendicular to the first layer. The system also includes a controller configured to modulate a bias on at least one PCSEL device of the plurality of PCSEL devices, the modulation configured to selectively operate each PCSEL device as an emitter or detector at a point in time based on the bias.
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公开(公告)号:US12110537B2
公开(公告)日:2024-10-08
申请号:US16901467
申请日:2020-06-15
发明人: Mark Umbarger , Gregory Porreca , Charles Towne , George Church
IPC分类号: C12Q1/6816 , C12Q1/6806 , C12Q1/6813 , C12Q1/6869
CPC分类号: C12Q1/6816 , C12Q1/6806 , C12Q1/6813 , C12Q1/6869 , C12Q1/6806 , C12Q2523/107 , C12Q2525/161 , C12Q2525/307 , C12Q2527/101 , C12Q2527/119 , C12Q2535/122 , C12Q2537/159 , C12Q1/6869 , C12Q2523/107 , C12Q2525/161 , C12Q2525/307 , C12Q2527/101 , C12Q2527/119 , C12Q2535/122 , C12Q2537/159
摘要: The invention generally relates to methods of performing a capture reaction. In certain embodiments, the method involves obtaining a nucleic acid, fragmenting the nucleic acid, and capturing a target sequence on the nucleic acid fragment using a capture moiety, such as a molecular inversion probe.
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