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公开(公告)号:US10351887B2
公开(公告)日:2019-07-16
申请号:US15634726
申请日:2017-06-27
Applicant: GENOMATICA, INC.
Inventor: Anthony P. Burgard , Robin E. Osterhout , Priti Pharkya , Mark J. Burk
IPC: C08G63/02 , C12P17/08 , C12N15/70 , C07D313/04 , C12N15/63 , C12P17/02 , C08G18/42 , C12N5/00 , C08G63/08 , C12N15/52
Abstract: The invention provides non-naturally occurring microbial organisms containing caprolactone pathways having at least one exogenous nucleic acid encoding a butadiene pathway enzyme expressed in a sufficient amount to produce caprolactone. The invention additionally provides methods of using such microbial organisms to produce caprolactone by culturing a non-naturally occurring microbial organism containing caprolactone pathways as described herein under conditions and for a sufficient period of time to produce caprolactone.
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公开(公告)号:US20190106701A1
公开(公告)日:2019-04-11
申请号:US15979313
申请日:2018-05-14
Applicant: Genomatica, Inc.
Inventor: Anthony P. Burgard , Robin E. Osterhout , Stephen J. Van Dien , Cara Ann Tracewell , Priti Pharkya , Stefan Andrae
IPC: C12N15/52 , C12N9/04 , C12N9/06 , C12N9/10 , C12P7/62 , C12N15/63 , C08F120/06 , C12P7/42 , C12P7/40 , C12P7/24 , C08G63/664
Abstract: Provided herein is a non-naturally occurring microbial organism having a methanol metabolic pathway that can enhance the availability of reducing equivalents in the presence of methanol. Such reducing equivalents can be used to increase the product yield of organic compounds produced by the microbial organism, such as 3-hydroxyisobutyrate or MAA. Also provided herein are methods for using such an organism to produce 3-hydroxyisobutyrate or MAA.
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公开(公告)号:US10150977B2
公开(公告)日:2018-12-11
申请号:US15263149
申请日:2016-09-12
Applicant: Genomatica, Inc.
Inventor: Mark J. Burk , Anthony P. Burgard , Robin E. Osterhout , Priti Pharkya
IPC: C12P17/10 , C12P13/00 , C12N1/00 , C12N1/16 , C12N1/20 , C12N15/70 , C12N15/52 , C07H21/04 , C12N1/38 , C12P7/40 , C12P7/44 , C12P13/02 , C12P17/12
Abstract: The invention provides a non-naturally occurring microbial organism having a 6-aminocaproic acid, caprolactam, hexametheylenediamine or levulinic acid pathway. The microbial organism contains at least one exogenous nucleic acid encoding an enzyme in the respective 6-aminocaproic acid, caprolactam, hexametheylenediamine or levulinic acid pathway. The invention additionally provides a method for producing 6-aminocaproic acid, caprolactam, hexametheylenediamine or levulinic acid. The method can include culturing a 6-aminocaproic acid, caprolactam or hexametheylenediamine producing microbial organism, where the microbial organism expresses at least one exogenous nucleic acid encoding a 6-aminocaproic acid, caprolactam, hexametheylenediamine or levulinic acid pathway enzyme in a sufficient amount to produce the respective product, under conditions and for a sufficient period of time to produce 6-aminocaproic acid, caprolactam, hexametheylenediamine or levulinic acid.
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公开(公告)号:US20180327788A1
公开(公告)日:2018-11-15
申请号:US15873798
申请日:2018-01-17
Applicant: Genomatica, Inc.
Inventor: Anthony P. Burgard , Robin E. Osterhout , Stephen J. Van Dien , Cara Ann Tracewell , Priti Pharkya , Stefan Andrae
IPC: C12P7/24 , C12N1/20 , C12N1/14 , C12N1/16 , C12N15/52 , C12P7/20 , C12N9/06 , C12N9/04 , C12P7/18 , C12P7/04 , C12N9/10
CPC classification number: C12P7/24 , C12N1/14 , C12N1/16 , C12N1/20 , C12N9/0006 , C12N9/0028 , C12N9/1007 , C12N15/52 , C12P7/04 , C12P7/18 , C12P7/20 , C12Y101/01244 , C12Y105/0102
Abstract: Provided herein is a non-naturally occurring microbial organism having a methanol metabolic pathway that can enhance the availability of reducing equivalents in the presence of methanol. Such reducing equivalents can be used to increase the product yield of organic compounds produced by the microbial organism, such as 1,2-propanediol, n-propanol, 1,3-propanediol or glycerol. Also provided herein are methods for using such an organism to produce 1,2-propanediol, n-propanol, 1,3-propanediol or glycerol.
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公开(公告)号:US20180312883A1
公开(公告)日:2018-11-01
申请号:US16032772
申请日:2018-07-11
Applicant: GENOMATICA, INC.
Inventor: Mark J. Burk , Robin E. Osterhout , Jun Sun
CPC classification number: C12P7/44 , C12N9/88 , C12Y402/01002
Abstract: The invention provides a non-naturally occurring microbial organism having a muconate pathway having at least one exogenous nucleic acid encoding a muconate pathway enzyme expressed in a sufficient amount to produce muconate. The muconate pathway including an enzyme selected from the group consisting of a beta-ketothiolase, a beta-ketoadipyl-CoA hydrolase, a beta-ketoadipyl-CoA transferase, a beta-ketoadipyl-CoA ligase, a 2-fumarylacetate reductase, a 2-fumarylacetate dehydrogenase, a trans-3-hydroxy-4-hexendioate dehydratase, a 2-fumarylacetate aminotransferase, a 2-fumarylacetate aminating oxidoreductase, a trans-3-amino-4-hexenoate deaminase, a beta-ketoadipate enol-lactone hydrolase, a muconolactone isomerase, a muconate cycloisomerase, a beta-ketoadipyl-CoA dehydrogenase, a 3-hydroxyadipyl-CoA dehydratase, a 2,3-dehydroadipyl-CoA transferase, a 2,3-dehydroadipyl-CoA hydrolase, a 2,3-dehydroadipyl-CoA ligase, a muconate reductase, a 2-maleylacetate reductase, a 2-maleylacetate dehydrogenase, a cis-3-hydroxy-4-hexendioate dehydratase, a 2-maleylacetate aminoatransferase, a 2-maleylacetate aminating oxidoreductase, a cis-3-amino-4-hexendioate deaminase, and a muconate cis/trans isomerase. Other muconate pathway enzymes also are provided. Additionally provided are methods of producing muconate.
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公开(公告)号:US10059967B2
公开(公告)日:2018-08-28
申请号:US14373160
申请日:2013-01-18
Applicant: Genomatica, Inc.
Inventor: Robin E. Osterhout , Anthony P. Burgard , Mark J. Burk
IPC: C12P7/44 , C12N1/20 , C12N15/00 , C12N9/02 , C12N9/04 , C12N9/06 , C12N9/10 , C12N9/12 , C12N9/88 , C08G63/183 , C12P7/24 , C12P7/40 , C12P9/00 , C07F9/09 , C07C51/43 , C12P7/62
CPC classification number: C12P7/44 , C07C51/43 , C07F9/091 , C08G63/183 , C12N9/0004 , C12N9/0006 , C12N9/0008 , C12N9/1007 , C12N9/1022 , C12N9/1085 , C12N9/1205 , C12N9/88 , C12P7/24 , C12P7/40 , C12P7/62 , C12P9/00 , C07C63/26 , C07C63/04
Abstract: The invention provides non-naturally occurring microbial organisms having a (2-hydroxy-3-methyl-4-oxobutoxy) phosphonate (2H3M40P) pathway, p-toluate pathway, and/or terephthalate pathway. The invention additionally provides methods of using such organisms to produce 2H3M40P, p-toluate or terephthalate. Also provided herein are processes for isolating bio-based aromatic carboxylic acid, in particular, p-toluic acid or terephthalic acid, from a culture medium, wherein the processes involve contacting the culture medium with sufficient carbon dioxide (CO2) to lower the pH of the culture medium to produce a precipitate comprised of the aromatic carboxylic acid.
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公开(公告)号:US20180237367A1
公开(公告)日:2018-08-23
申请号:US15845398
申请日:2017-12-18
Applicant: Genomatica, Inc.
Inventor: SVB Janardhan GARIKIPATI , Michael JAPS , Ishmael M. SONICO
IPC: C07C29/80 , C12P7/18 , C07C33/046 , C07C31/20 , C07C29/90 , B01D1/22 , C07C29/00 , B01D3/14 , B01D3/00 , C07C29/74
CPC classification number: C07C29/80 , B01D1/22 , B01D3/002 , B01D3/143 , B01D3/145 , C07C29/00 , C07C29/74 , C07C29/90 , C07C31/207 , C12P7/18 , C07C33/046
Abstract: A process of purifying 1,4-butanediol (1,4-BDO) from a fermentation broth including separating solid materials, salts and water, and subjecting the resulting material to a two, three or four column distillation system, that can include a wiped film evaporator to produce a purified 1,4-butanediol product.
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公开(公告)号:US10041093B2
公开(公告)日:2018-08-07
申请号:US15383593
申请日:2016-12-19
Applicant: GENOMATICA, INC.
Inventor: Mark J. Burk , Robin E. Osterhout , Jun Sun
CPC classification number: C12P7/44 , C12N9/88 , C12Y402/01002
Abstract: The invention provides a non-naturally occurring microbial organism having a muconate pathway having at least one exogenous nucleic acid encoding a muconate pathway enzyme expressed in a sufficient amount to produce muconate. The muconate pathway including an enzyme selected from the group consisting of a beta-ketothiolase, a beta-ketoadipyl-CoA hydrolase, a beta-ketoadipyl-CoA transferase, a beta-ketoadipyl-CoA ligase, a 2-fumarylacetate reductase, a 2-fumarylacetate dehydrogenase, a trans-3-hydroxy-4-hexendioate dehydratase, a 2-fumarylacetate aminotransferase, a 2-fumarylacetate aminating oxidoreductase, a trans-3-amino-4-hexenoate deaminase, a beta-ketoadipate enol-lactone hydrolase, a muconolactone isomerase, a muconate cycloisomerase, a beta-ketoadipyl-CoA dehydrogenase, a 3-hydroxyadipyl-CoA dehydratase, a 2,3-dehydroadipyl-CoA transferase, a 2,3-dehydroadipyl-CoA hydrolase, a 2,3-dehydroadipyl-CoA ligase, a muconate reductase, a 2-maleylacetate reductase, a 2-maleylacetate dehydrogenase, a cis-3-hydroxy-4-hexendioate dehydratase, a 2-maleylacetate aminoatransferase, a 2-maleylacetate aminating oxidoreductase, a cis-3-amino-4-hexendioate deaminase, and a muconate cis/trans isomerase. Other muconate pathway enzymes also are provided. Additionally provided are methods of producing muconate.
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公开(公告)号:US09994505B2
公开(公告)日:2018-06-12
申请号:US14066598
申请日:2013-10-29
Applicant: Genomatica, Inc.
Inventor: Warren Clark , Michael Japs , Mark J. Burk
CPC classification number: C07C29/76 , C12P7/18 , C07C31/207
Abstract: A process of isolating 1,4-butanediol (1,4-BDO) from a fermentation broth includes separating a liquid fraction enriched in 1,4-BDO from a solid fraction comprising cells, removing water from said liquid fraction, removing salts from said liquid fraction, and purifying 1,4-BDO. A process for producing 1,4-BDO includes culturing a 1,4-BDO-producing microorganism in a fermentor for a sufficient period of time to produce 1,4-BDO. The 1,4-BDO-producing microorganism includes a microorganism having a 1,4-BDO pathway having one or more exogenous genes encoding a 1,4-BDO pathway enzyme and/or one or more gene disruptions. The process for producing 1,4-BDO further includes isolating 1,4-BDO.
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公开(公告)号:US20180142269A1
公开(公告)日:2018-05-24
申请号:US15682349
申请日:2017-08-21
Applicant: Genomatica, Inc.
Inventor: Mark J. BURK , Anthony P. BURGARD , Robin E. OSTERHOUT , Jun SUN
IPC: C12P7/18 , C12N9/04 , C12N15/81 , C12N15/70 , C12N15/52 , C12N9/00 , C12N9/90 , C12N9/88 , C12N9/16 , C12N9/10 , C12N9/12 , C12N9/02
CPC classification number: C12P7/18 , B01D3/002 , C12N9/0006 , C12N9/0008 , C12N9/001 , C12N9/1029 , C12N9/1096 , C12N9/12 , C12N9/13 , C12N9/16 , C12N9/88 , C12N9/90 , C12N9/93 , C12N15/52 , C12N15/70 , C12N15/81 , C12Y101/01157 , C12Y402/01055
Abstract: The invention provides non-naturally occurring microbial organisms comprising a 1,4-butanediol (BDO) pathway comprising at least one exogenous nucleic acid encoding a BDO pathway enzyme expressed in a sufficient amount to produce BDO. The invention additionally provides methods of using such microbial organisms to produce BDO.
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