-
公开(公告)号:US12084716B2
公开(公告)日:2024-09-10
申请号:US17473760
申请日:2021-09-13
申请人: 10X Genomics, Inc.
发明人: Phillip Belgrader , Zachary Bent , Rajiv Bharadwaj , Vijay Kumar Sreenivasa Gopalan , Josephine Harada , Christopher Hindson , Mohammad Rahimi Lenji , Michael Ybarra Lucero , Geoffrey McDermott , Elliott Meer , Tarjei Sigurd Mikkelsen , Christopher Joachim O'Keeffe , Katherine Pfeiffer , Andrew D. Price , Paul Ryvkin , Serge Saxonov , John R. Stuelpnagel , Jessica Michele Terry , Tobias Daniel Wheeler , Indira Wu , Solongo Batjargal Ziraldo , Stephane Claude Boutet , Sarah Taylor , Niranjan Srinivas
IPC分类号: C12Q1/68 , C12Q1/6806 , C12Q1/683 , C12Q1/6874
CPC分类号: C12Q1/6874 , C12Q1/6806 , C12Q1/683 , C12Q2525/191 , C12Q2537/143 , C12Q2563/179
摘要: The present disclosure provides compositions, methods, systems, and devices for polynucleotide processing and analyte characterization. Such polynucleotide processing may be useful for a variety of applications, including analyte characterization by polynucleotide sequencing. The compositions, methods, systems, and devices disclosed herein generally describe barcoded oligonucleotides, which can be bound to a bead, such as a gel bead, useful for characterizing one or more analytes including, for example, protein (e.g., cell surface or intracellular proteins), genomic DNA, and RNA (e.g., mRNA or CRISPR guide RNAs). Also described herein, are barcoded labelling agents and oligonucleotide molecules useful for “tagging” analytes for characterization.
-
公开(公告)号:US11768175B1
公开(公告)日:2023-09-26
申请号:US17192536
申请日:2021-03-04
申请人: 10x Genomics, Inc.
IPC分类号: G01N27/447
CPC分类号: G01N27/44713
摘要: The present disclosure provides electrophoretic systems, methods and compositions for spatial analysis, which can serve to magnify or demagnify spatial resolution of analytes of interest that are captured using electrophoresis. Some implementations can use a diverging or converging electric field in an electrophoretic capture system. Such a divergent or convergent electric field, as opposed to a parallel electric field, can be generated by, for example, utilizing different sizes of electrodes associated with or imbedded in substrates. Also provided herein are electrophoretic systems, methods and compositions for spatial analysis, which can serve to selectively migrate one or more analytes from a region of interest in the biological sample for capture using electrophoresis.
-
公开(公告)号:US20230295722A1
公开(公告)日:2023-09-21
申请号:US18323091
申请日:2023-05-24
申请人: 10x Genomics, Inc.
发明人: Rajiv Bharadwaj
IPC分类号: C12Q1/6874
CPC分类号: C12Q1/6874
摘要: This disclosure relates to compositions and methods for analyzing single cells using cell printing and spatial analysis.
-
公开(公告)号:US20230278037A1
公开(公告)日:2023-09-07
申请号:US18177504
申请日:2023-03-02
申请人: 10x Genomics, Inc.
发明人: Rajiv Bharadwaj , Lynna Chen , Francis Cui , Daniel Freitas , Mohammad Rahimi Lenji , Martin Sauzade , Augusto Manuel Tentori , Tobias Daniel Wheeler
IPC分类号: B01L3/00
CPC分类号: B01L3/502784 , B01L2200/0673 , B01L2200/16 , B01L2300/0851 , B01L2300/0858 , B01L2300/0864 , B01L2300/0867
摘要: Devices, systems, and their methods of use, for generating and collecting droplets are provided. The invention provides multiplex devices that increase droplet formation in a limited area.
-
公开(公告)号:US11660601B2
公开(公告)日:2023-05-30
申请号:US17851416
申请日:2022-06-28
申请人: 10x Genomics, Inc.
CPC分类号: B01L3/502761 , B01L3/502715 , B01L3/502784 , G01N15/1031 , G01N15/1056 , G01N15/1484 , B01L2200/0652 , B01L2200/0673 , B01L2300/0867 , B01L2400/043 , B01L2400/0415 , G01N2015/1081 , G01N2015/149
摘要: Methods and systems for sorting particles are provided. Methods and systems for sorting cell beads are provided. In some cases, cell beads may be sorted from particles unoccupied with cell derivatives. In some cases, singularly occupied cell beads may be sorted from unoccupied particles and multiply occupied cell beads.
-
公开(公告)号:US11636921B2
公开(公告)日:2023-04-25
申请号:US16698612
申请日:2019-11-27
申请人: 10X Genomics, Inc.
发明人: Michael Schnall-Levin , Rajiv Bharadwaj , Zahra Kamila Belhocine , Andrew D. Price , Yifeng Yin , Vijay Kumar Sreenivasa Gopalan , Zeljko Jovan Dzakula
摘要: Systems and methods for inferring a status of a cell population are provided. Described techniques allow deconvolving a first clonal population comprising a first plurality of cells of a species, wherein nucleic acid sequence reads from each cell in the first plurality of cells are obtained. The nucleic acid sequence reads are mapped into bins representing portions of a reference genome, and a pattern of sequence read counts for each cell across the multiple bins is used to assign a cell to a group, thereby inferring a mitotic status of the cell. The assignment of nucleic acid sequence reads into bins is also be used for segregating cells into classes based on a status of a certain biological marker in each cell. Comparison of sequence read counts for a subset of bins across the cell classes allows evaluating effect of a compound on a cell status.
-
公开(公告)号:US20220033888A1
公开(公告)日:2022-02-03
申请号:US17312247
申请日:2019-12-06
申请人: 10x Genomics, Inc.
发明人: Michael Schnall-Levin , Eswar Prasad Ramachandran Iyer , Yifeng Yin , Tarjei Sigurd Mikkelsen , Preyas Shah , Geoffrey McDermott , Adam Lowe , Joshua Delaney , Augusto Manuel Tentori , Rajiv Bharadwaj , Stefania Giacomello , Alexander Gagnon , Meghan L. F. Frey , Zachary Bent , Erik Leonard Henrik Borgstrom
IPC分类号: C12Q1/6837 , C12Q1/6881
摘要: The present disclosure relates to compositions and methods for generating capture probes on a substrate for identifying the location of analytes in a biological sample.
-
公开(公告)号:US11193122B2
公开(公告)日:2021-12-07
申请号:US17208369
申请日:2021-03-22
申请人: 10X Genomics, Inc.
发明人: Zahra Kamila Belhocine , Rajiv Bharadwaj , Christopher Hindson , Michael Schnall-Levin , Bill Kengli Lin , Anthony Makarewicz , Pranav Patel , Andrew D. Price , Mohammad Rahimi Lenji , Tobias Daniel Wheeler , Yifeng Yin
IPC分类号: C12N15/10 , C12Q1/6806 , C12Q1/6869
摘要: Methods and systems are provided for sample preparation techniques and sequencing of macromolecular constituents of cells and other biological materials.
-
公开(公告)号:US11084036B2
公开(公告)日:2021-08-10
申请号:US16180356
申请日:2018-11-05
申请人: 10X GENOMICS, INC.
IPC分类号: B01L3/00 , G01N1/28 , G01N33/487
摘要: Microfluidic channels networks and systems are provided. One network includes a first fluid channel having a first depth dimension; at least a second channel intersecting the first channel at a first intersection; at least a third channel in fluid communication with the first intersection, at least one of the first intersection and the third channel having a depth dimension that is greater than the first depth dimension. Also provided is a flow control system for directing fluids in the network. Systems are additionally provided for flowing disrupted particles into a droplet formation junction, whereby a portion of the disrupted particles or the contents thereof are encapsulated into one or more droplets. Further provided is a method for controlling filling of a microfluidic network by controlling passive valving microfluidic channel network features.
-
公开(公告)号:US20210222158A1
公开(公告)日:2021-07-22
申请号:US17208369
申请日:2021-03-22
申请人: 10X Genomics, Inc.
发明人: Zahra Kamila Belhocine , Rajiv Bharadwaj , Christopher Hindson , Michael Schnall-Levin , Bill Kengli Lin , Anthony Makarewicz , Pranav Patel , Katherine Pfeiffer , Andrew D. Price , Mohammad Rahimi Lenji , Tobias Daniel Wheeler , Yifeng Yin
IPC分类号: C12N15/10 , C12Q1/6806 , C12Q1/6869
摘要: Methods and systems are provided for sample preparation techniques and sequencing of macromolecular constituents of cells and other biological materials.
-
-
-
-
-
-
-
-
-