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公开(公告)号:US10087470B2
公开(公告)日:2018-10-02
申请号:US14806435
申请日:2015-07-22
Applicant: Genomatica, Inc.
Inventor: Anthony P. Burgard , Robin E. Osterhout , Jun Sun , Priti Pharkya
Abstract: A non-naturally occurring microbial organism includes a microbial organism having a reductive TCA or Wood-Ljungdahl pathway in which at least one exogenous nucleic acid encoding these pathway enzymes is expressed in a sufficient amount to enhance carbon flux through acetyl-CoA. A method for enhancing carbon flux through acetyl-CoA includes culturing theses non-naturally occurring microbial organisms under conditions and for a sufficient period of time to produce a product having acetyl-CoA as a building block. Another non-naturally occurring microbial organism includes at least one exogenous nucleic acid encoding an enzyme expressed in a sufficient amount to enhance the availability of reducing equivalents in the presence of carbon monoxide or hydrogen, thereby increasing the yield of redox-limited products via carbohydrate-based carbon feedstock. A method for enhancing the availability of reducing equivalents in the presence of carbon monoxide or hydrogen includes culturing this organism for a sufficient period of time to produce a product.
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公开(公告)号:US20180195076A1
公开(公告)日:2018-07-12
申请号:US15914308
申请日:2018-03-07
Applicant: Genomatica, Inc.
Inventor: Priti Pharkya
CPC classification number: C12N15/52 , C12N9/1096 , C12N9/88 , C12N15/70 , C12P13/001 , C12Y206/01085 , C12Y401/01024 , C12Y401/03038
Abstract: A non-naturally occurring microbial organism having an aniline pathway includes at least one exogenous nucleic acid encoding an aniline pathway enzyme expressed in a sufficient amount to produce aniline. The aniline pathway includes (1) an aminodeoxychorismate synthase, an aminodeoxychorismate lyase, and a 4-aminobenzoate carboxylyase or (2) an anthranilate synthase and an anthranilate decarboxylase. A method for producing aniline, includes culturing these non-naturally occurring microbial organisms under conditions and for a sufficient period of time to produce aniline.
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公开(公告)号:US20180155742A1
公开(公告)日:2018-06-07
申请号:US15645880
申请日:2017-07-10
Applicant: Genomatica, Inc.
Inventor: Mark J. BURK , Anthony P. BURGARD , Jun SUN , Robin E. OSTERHOUT , Priti PHARKYA
IPC: C12P5/02 , C07C11/16 , C08F136/06 , C12N15/52
CPC classification number: C12P5/026 , C07C11/16 , C08F136/06 , C12N15/52
Abstract: The invention provides non-naturally occurring microbial organisms having a butadiene pathway. The invention additionally provides methods of using such organisms to produce butadiene.
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公开(公告)号:US09988656B2
公开(公告)日:2018-06-05
申请号:US14954487
申请日:2015-11-30
Applicant: Genomatica, Inc.
Inventor: Jun Sun , Mark J. Burk , Anthony P. Burgard , Robin E. Osterhout , Wei Niu , John D. Trawick , Robert Haselbeck
Abstract: The invention provides non-naturally occurring microbial organisms comprising 1,4-butanediol (14-BDO) and gamma-butyrolactone (GBL) pathways comprising at least one exogenous nucleic acid encoding a 14-BDO and GBL pathway enzyme expressed in a sufficient amount to produce 14-BDO and GBL. The invention additionally provides methods of using such microbial organisms to produce 14-BDO and GBL.
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公开(公告)号:US20180135087A1
公开(公告)日:2018-05-17
申请号:US15634726
申请日:2017-06-27
Applicant: GENOMATICA, INC.
Inventor: Anthony P. BURGARD , Robin E. OSTERHOUT , Priti PHARKYA , Mark J. BURK
IPC: C12P17/08 , C12N15/52 , C12N5/00 , C08G63/08 , C08G18/42 , C07D313/04 , C12N15/70 , C12N15/63 , C12P17/02
CPC classification number: C12P17/08 , C07D313/04 , C08G18/4277 , C08G63/08 , C12N5/0018 , C12N15/52 , C12N15/63 , C12N15/70 , C12P17/02
Abstract: The invention provides non-naturally occurring microbial organisms containing caprolactone pathways having at least one exogenous nucleic acid encoding a butadiene pathway enzyme expressed in a sufficient amount to produce caprolactone. The invention additionally provides methods of using such microbial organisms to produce caprolactone by culturing a non-naturally occurring microbial organism containing caprolactone pathways as described herein under conditions and for a sufficient period of time to produce caprolactone.
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公开(公告)号:US20180065907A1
公开(公告)日:2018-03-08
申请号:US15651929
申请日:2017-07-17
Applicant: GENOMATICA, INC.
Inventor: SVB Janardhan GARIKIPATI , Michael JAPS , Ishmael M. SONICO
CPC classification number: C07C29/80 , B01D3/002 , B01D3/143 , B01D3/145 , C07C31/207 , C08G18/3206 , C08G65/34 , C12P7/18
Abstract: A process of purifying 1,4-butanediol (1,4-BDO) from a fermentation broth including separating solid materials, salts and water, and subjecting the resulting material to a two, three or four column distillation system, that can include a wiped film evaporator to produce a purified 1,4-butanediol.
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公开(公告)号:US20170362149A1
公开(公告)日:2017-12-21
申请号:US15696098
申请日:2017-09-05
Applicant: GENOMATICA, INC.
Inventor: SVB Janardhan GARIKIPATI , Michael JAPS , Ishmael M. SONICO
CPC classification number: C07C29/80 , B01D3/002 , B01D3/143 , B01D3/145 , C07C31/207 , C08G18/3206 , C08G65/34 , C12P7/18
Abstract: A process of purifying 1,4-butanediol (1,4-BDO) from a fermentation broth including separating solid materials, salts and water, and subjecting the resulting material to a two, three or four column distillation system, that can include a wiped film evaporator to produce a purified 1,4-butanediol.
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公开(公告)号:US20170298363A1
公开(公告)日:2017-10-19
申请号:US15511833
申请日:2015-09-18
Applicant: GENOMATICA, INC
Inventor: Priti Pharkya , Anthony Burgard , Eric Roland Nunez Van Name
CPC classification number: C12N15/52 , C12N9/1205 , C12N9/88 , C12P5/026 , C12P7/04 , C12P7/18 , C12P7/40 , C12P7/42 , C12Y207/0104 , C12Y401/02009 , C12Y401/02022 , Y02E50/343
Abstract: The invention provides non-natural microbial organisms containing enzymatic pathways and/or metabolic modifications for enhancing carbon flux through acetyl-CoA, or oxaloacetate and acetyl-CoA. Embodiments of the invention include microbial organisms having a pathway to acetyl-CoA and oxaloacetate that includes phosphoketolase (a PK pathway). The organisms also have either (i) a genetic modification that enhances the activity of the non-phosphotransferase system (non-PTS) for sugar uptake, and/or (ii) a genetic modification(s) to the organism's electron transport chain (ETC) that enhances efficiency of ATP production, that enhances availability of reducing equivalents or both. The microbial organisms can optionally include (iii) a genetic modification that maintains, attenuates, or eliminates the activity of a phosphotransferase system (PTS) for sugar uptake. The enhanced carbon flux through acetyl-CoA and oxaloacetate can be used for production of a bioderived compound, and the microbial organisms can further include a pathway capable of producing the bioderived compound.
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公开(公告)号:US09708632B2
公开(公告)日:2017-07-18
申请号:US14673600
申请日:2015-03-30
Applicant: Genomatica, Inc.
Inventor: Anthony P. Burgard , Mark J. Burk , Robin E. Osterhout , Priti Pharkya
IPC: C12P7/18 , C12P7/16 , C12N9/88 , C12N15/00 , C12N15/52 , C12N9/04 , C07C29/80 , C12N9/02 , C12N9/10
CPC classification number: C12P7/18 , C07C29/80 , C12N9/0006 , C12N9/0008 , C12N9/1029 , C12N9/1096 , C12N9/88 , C12N15/52 , C12Y101/01 , C12Y101/01157 , C12Y102/01 , C12Y203/01 , C12Y206/01 , C12Y401/01 , C12Y402/01 , C12Y403/01
Abstract: A non-naturally occurring microbial organism includes a microbial organism having a 1,3-butanediol (1,3-BDO) pathway having at least one exogenous nucleic acid encoding a 1,3-BDO pathway enzyme expressed in a sufficient amount to produce 1,3-BDO. The pathway includes an enzyme selected from a 2-amino-4-ketopentanoate (AKP) thiolase, an AKP dehydrogenase, a 2-amino-4-hydroxypentanoate aminotransferase, a 2-amino-4-hydroxypentanoate oxidoreductase (deaminating), a 2-oxo-4-hydroxypentanoate decarboxylase, a 3-hydroxybutyraldehyde reductase, an AKP aminotransferase, an AKP oxidoreductase (deaminating), a 2,4-dioxopentanoate decarboxylase, a 3-oxobutyraldehyde reductase (ketone reducing), a 3-oxobutyraldehyde reductase (aldehyde reducing), a 4-hydroxy-2-butanone reductase, an AKP decarboxylase, a 4-aminobutan-2-one aminotransferase, a 4-aminobutan-2-one oxidoreductase (deaminating), a 4-aminobutan-2-one ammonia-lyase, a butenone hydratase, an AKP ammonia-lyase, an acetylacrylate decarboxylase, an acetoacetyl-CoA reductase (CoA-dependent, aldehyde forming), an acetoacetyl-CoA reductase (CoA-dependent, alcohol forming), an acetoacetyl-CoA reductase (ketone reducing), a 3-hydroxybutyryl-CoA reductase (aldehyde forming), a 3-hydroxybutyryl-CoA reductase (alcohol forming), a 4-hydroxybutyryl-CoA dehydratase, and a crotonase. A method for producing 1,3-BDO, includes culturing such microbial organisms under conditions and for a sufficient period of time to produce 1,3-BDO.
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公开(公告)号:US09677045B2
公开(公告)日:2017-06-13
申请号:US13908907
申请日:2013-06-03
Applicant: Genomatica, Inc.
Inventor: Priti Pharkya , Anthony P. Burgard , Stephen J. Van Dien , Robin E. Osterhout , Mark J. Burk , John D. Trawick , Michael P. Kuchinskas , Brian Steer
IPC: C12N1/20 , C12P7/42 , C12N15/63 , C12P7/18 , C12N9/18 , C12N15/52 , C07C31/20 , C07C59/01 , C08G18/28 , C08G18/32 , C08G63/06 , C08G63/16 , C08G63/181 , C08G69/02
CPC classification number: C12N1/20 , C07C31/207 , C07C59/01 , C08G18/284 , C08G18/3206 , C08G63/06 , C08G63/16 , C08G63/181 , C08G69/02 , C12N9/18 , C12N15/52 , C12N15/63 , C12P7/18 , C12P7/42 , C12Y301/01 , Y02P20/52
Abstract: The invention provides non-naturally occurring microbial organisms having a 4-hydroxybutyrate pathway and being capable of producing 4-hydroxybutyrate, wherein the microbial organism comprises one or more genetic modifications. The invention additionally provides methods of producing 4-hydroxybutyrate or related products using the microbial organisms.
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