-
公开(公告)号:US11913071B2
公开(公告)日:2024-02-27
申请号:US18154630
申请日:2023-01-13
发明人: Daan Witters , Eli N. Glezer , Allen Lipson
IPC分类号: C12Q1/6869 , C12Q1/6834
CPC分类号: C12Q1/6869 , C12Q1/6834
摘要: Disclosed herein, inter alia, are substrates, kits, and efficient methods of preparing and sequencing two or more regions of a double-stranded polynucleotide.
-
公开(公告)号:US20240060128A1
公开(公告)日:2024-02-22
申请号:US18361434
申请日:2023-07-28
发明人: Steven GORDON , Jerzy OLEJNIK
IPC分类号: C12Q1/6869 , C07H19/00 , C12Q1/6874 , G01N21/05 , G01N21/64
CPC分类号: C12Q1/6869 , C07H19/00 , C12Q1/6874 , G01N21/05 , G01N21/6428 , G01N21/645 , C12Q2535/101 , G01N2021/0346 , G01N2021/058 , G01N2021/6419 , G01N2021/6421 , G01N2021/6441 , G01N2021/6471
摘要: The invention provides methods and compositions, including, without limitation, algorithms, computer readable media, computer programs, apparatus, and systems for determining the identity of nucleic acids in nucleotide sequences using, for example, data obtained from sequencing by synthesis methods. The methods of the invention include correcting one or more phenomena that are encountered during nucleotide sequencing, such as using sequencing by synthesis methods. These phenomena include, without limitation, sequence lead, sequence lag, spectral crosstalk, and noise resulting from variations in illumination and/or filter responses.
-
公开(公告)号:US20240060126A1
公开(公告)日:2024-02-22
申请号:US18341906
申请日:2023-06-27
发明人: Lakmal Nishantha Jayasinghe , Elizabeth Jayne Wallace , Jonathan Bankes Pugh , Richard George Hambley , Neil Roger Wood , Clive Gavin Brown , James White , Andrew John Heron , Mark John Bruce , Christopher Peter Youd , Rebecca Victoria Bowen
IPC分类号: C12Q1/6869 , C07K14/35
CPC分类号: C12Q1/6869 , C07K14/35
摘要: The invention relates to improving the movement of a target polynucleotide with respect to a transmembrane pore when the movement is controlled by a polynucleotide binding protein. The invention also relates to improved transmembrane pores and polynucleotide binding proteins
-
124.
公开(公告)号:US11898202B2
公开(公告)日:2024-02-13
申请号:US17686007
申请日:2022-03-03
申请人: Genomill Health Oy
IPC分类号: C12Q1/6865 , C12Q1/6806 , C12Q1/6869
CPC分类号: C12Q1/6865 , C12Q1/6806 , C12Q1/6869
摘要: The present invention disclosure relates to a next generation DNA sequencing method and use for accurate and massively parallel quantification of one or more nucleic acid targets, for example in large volumes of unpurified sample material. More particularly, the invention is related to a method and a kit comprising probes for detecting and quantifying genetic targets in complex samples. The invention includes one or more target-specific nucleic acid probes per genetic target and a bridge oligo or bridge oligo complex.
-
公开(公告)号:US20240043935A1
公开(公告)日:2024-02-08
申请号:US18227831
申请日:2023-07-28
发明人: Yuk-Ming Dennis Lo , Peiyong Jiang , Kwan Chee Chan , Masashi Yukawa , Lu Ji , Jinyue Bai
IPC分类号: C12Q1/6886 , C12Q1/6809 , C12Q1/6869 , G16B20/10 , G16B40/00
CPC分类号: C12Q1/6886 , C12Q1/6809 , C12Q1/6869 , G16B20/10 , G16B40/00 , C12Q2600/154 , C12Q2600/158
摘要: Measuring quantities (e.g., relative frequencies) of particular sequence motifs of cell-free DNA fragments in a biological sample can be used to analyze the biological sample. The particular sequence motifs or sequence sizes in certain genomic regions may indicate a histone modification. The sequence motifs and/or sizes can be used to measure a property of the sample (e.g., fractional concentration of a tissue type or a characteristic of the tissue type), to measure an amount of histone modifications, to determine a condition of the organism based on such measurements, and to enrich a biological sample for clinically-relevant DNA. Different tissue types can exhibit different patterns for the relative frequencies of the sequence motifs. Measures of the relative frequencies of sequence motifs of cell-free DNA can be used for analysis.
-
公开(公告)号:US20240043922A1
公开(公告)日:2024-02-08
申请号:US18491071
申请日:2023-10-20
IPC分类号: C12Q1/6869 , C12Q1/6886
CPC分类号: C12Q1/6869 , C12Q1/6886 , G16B15/00
摘要: Disclosed herein in are methods and systems for determining genetic variants (e.g., copy number variation) in a polynucleotide sample. A method for determining copy number variations includes tagging double-stranded polynucleotides with duplex tags, sequencing polynucleotides from the sample and estimating total number of polynucleotides mapping to selected genetic loci. The estimate of total number of polynucleotides can involve estimating the number of double-stranded polynucleotides in the original sample for which no sequence reads are generated. This number can be generated using the number of polynucleotides for which reads for both complementary strands are detected and reads for which only one of the two complementary strands is detected.
-
公开(公告)号:US20240043893A1
公开(公告)日:2024-02-08
申请号:US18353058
申请日:2023-07-14
发明人: David A. Weitz , Huidan Zhang , John Heyman , Allon Moshe Klein
IPC分类号: C12P19/34 , C12Q1/6869 , C12N15/10
CPC分类号: C12P19/34 , C12Q1/6869 , C12N15/1093 , C12N15/1006 , C12N15/1065 , C12Q2600/156
摘要: The present invention generally relates to microfluidics and labeled nucleic acids. For example, certain aspects are generally directed to systems and methods for labeling nucleic acids within microfluidic droplets or other compartments, for instance, arising from a cell. In one set of embodiments, particles may be prepared containing oligonucleotides that can be used to determine target nucleic acids, e.g., attached to the surface of the particles. The oligonucleotides may include “barcodes” or unique sequences that can be used to distinguish nucleic acids in a droplet from those in another droplet, for instance, even after the nucleic acids are pooled together or removed from the droplets. Certain embodiments of the invention are generally directed to systems and methods for attaching additional or arbitrary sequences to the nucleic acids within microfluidic droplets or other compartments, e.g., recognition sequences that can be used to selectively determine or amplify a desired sequence suspected of being present within a droplet. Such systems may be useful, for example, for selective amplification in various applications, such as high-throughput sequencing applications.
-
公开(公告)号:US20240035101A1
公开(公告)日:2024-02-01
申请号:US18363520
申请日:2023-08-01
发明人: David O'Connor , Thomas Friedrich , Marc Johnson
IPC分类号: C12Q1/70 , C12Q1/6869
CPC分类号: C12Q1/701 , C12Q1/6869 , C12Q2600/156 , C12Q1/6804
摘要: Disclosed herein are methods for identifying antigenic variants from cryptic lineages arising in a virus population and methods of using the identified antigenic variants.
-
公开(公告)号:US20240035095A1
公开(公告)日:2024-02-01
申请号:US18481092
申请日:2023-10-04
IPC分类号: C12Q1/6886 , G16B30/10 , G16B20/20 , G16B35/20 , G16B30/00 , C12Q1/6874 , G16H70/60 , G16H10/40 , G16H50/30 , G16H50/70 , G16H20/10 , G16B40/00 , G16B20/10 , C12N15/10 , G16H50/20 , C12Q1/6869 , G16B20/00
CPC分类号: C12Q1/6886 , G16B30/10 , G16B20/20 , G16B35/20 , G16B30/00 , C12Q1/6874 , G16H70/60 , G16H10/40 , G16H50/30 , G16H50/70 , G16H20/10 , G16B40/00 , G16B20/10 , C12N15/1089 , G16H50/20 , C12Q1/6869 , G16B20/00 , G16H10/60
摘要: Processes and materials to detect cancer from a biopsy are described. In some cases, cell-free nucleic acids can be sequenced, and the sequencing result can be utilized to detect sequences derived from a neoplasm. Detection of somatic variants occurring in phase can indicate the presence of cancer in a diagnostic scan and a clinical intervention can be performed.
-
公开(公告)号:US20240026458A1
公开(公告)日:2024-01-25
申请号:US18015901
申请日:2021-07-15
IPC分类号: C12Q1/6886 , G01N33/574 , C12Q1/6851 , C12Q1/6869
CPC分类号: C12Q1/6886 , G01N33/57492 , C12Q1/6851 , C12Q1/6869 , C12Q2600/156 , C12Q2600/158 , C12Q2600/106 , G01N2440/14
摘要: Present invention provides methods for determining sensitivity or resistance to treatment with an antineoplastic agent in a subject diagnosed with a neoplastic disease, the method comprising determining in a biological sample obtained from said subject the presence or absence of a genetic or epigenetic alteration leading to reduced or abolished expression or function of FAT1, or determining whether FAT1 expression or function is reduced or abolished in a biological sample obtained from said subject; wherein said antineoplastic agent is selected from the group consisting of an epidermal growth factor receptor (EGFR) inhibitor, a mitogen-activated protein kinase (MEK) inhibitor, a Ca2+/calmodulin-dependent protein kinase (CAMK) inhibitor, and a SRC kinase inhibitor. Present invention further also provides methods of treating a subject diagnosed with a neoplastic disease, comprising determining the sensitivity or resistance of said subject to treatment with an antineoplastic agent.
-
-
-
-
-
-
-
-
-