Binary probe and clamp composition and methods for target hybridization detection
    33.
    发明授权
    Binary probe and clamp composition and methods for target hybridization detection 有权
    二进制探针和夹钳组成及靶杂交检测方法

    公开(公告)号:US08067165B2

    公开(公告)日:2011-11-29

    申请号:US12538823

    申请日:2009-08-10

    IPC分类号: C12Q1/68 C07H21/02 C07H21/04

    摘要: Binary probe and clamp compositions conduct methods for target hybridization detection. Where the probe is a substrate for exonuclease cleavage, the composition provides quantitation and detection of PCR products, by real-time and end-point measurements. Where the probe is an amplification primer, the composition provides an improved method for labelling and detection of PCR products. Probes and clamps may be labelled with fluorescent dyes, quenchers, hybridization-stabilizing moieties, chemiluminescent dyes, and affinity ligands. Clamps may be nucleic acid analogs, such as 2-aminoethylglycine PNA.

    摘要翻译: 二进制探针和夹具组合物进行靶杂交检测的方法。 当探针是外切核酸酶切割的底物时,组合物通过实时和终点测量提供PCR产物的定量和检测。 当探针是扩增引物时,组合物提供了PCR产物的标记和检测的改进方法。 探针和夹具可以用荧光染料,猝灭剂,杂交稳定部分,化学发光染料和亲和配体标记。 夹具可以是核酸类似物,例如2-氨基乙基甘氨酸PNA。

    Synthons for the synthesis and deprotection of peptide nucleic acids under mild conditions
    36.
    发明授权
    Synthons for the synthesis and deprotection of peptide nucleic acids under mild conditions 失效
    用于在温和条件下合成和去保护肽核酸的合成子

    公开(公告)号:US06172226B2

    公开(公告)日:2001-01-09

    申请号:US09116793

    申请日:1998-07-16

    IPC分类号: C07D23910

    摘要: A method is disclosed for preparing novel PNA synthons having protecting groups capable of removal under mild conditions. The PNA synthons are prepared by coupling novel N-substituted nucleobase intermediates having carbamate protection of the exocyclic amino group of the heterocycle to an amino protected backbone or an amino protected backbone ester of the amino acid N-(2-aminoethyl)-glycine. By the method of this invention, the resultant PNA synthons can have orthogonal protection of the carbamate protected nucleobase and the amino protected backbone. The PNA synthons are useful in the synthesis of peptide nucleic acids (PNAs) and other oligomers such as PNA-DNA chimeras, and may be used in automated synthesizers. Novel compositions of matter are also disclosed. In addition, a guanine PNA synthon having selective carbamate protection of the exocyclic 2-amino group with the C6 carbonyl group unprotected is disclosed.

    摘要翻译: 公开了一种制备具有能够在温和条件下去除的保护基的新型PNA合成子的方法。 通过将具有杂环的外环氨基的氨基甲酸酯保护的新的N-取代的核碱基中间体与氨基酸N-(2-氨基乙基) - 甘氨酸的氨基保护的主链或氨基保护的主链酯偶联来制备PNA合成子。 通过本发明的方法,所得的PNA合成子可以具有氨基甲酸酯保护的核碱基和氨基保护的主链的正交保护。 PNA合成子可用于合成肽核酸(PNA)和其他寡聚体如PNA-DNA嵌合体,并可用于自动合成仪中。 还公开了新的组合物。 此外,公开了具有不受保护的C6羰基的环外2-氨基的选择性氨基甲酸酯保护的鸟嘌呤PNA合成子。

    PNA-DNA chimeric probe arrays and methods of use
    38.
    发明授权
    PNA-DNA chimeric probe arrays and methods of use 有权
    PNA-DNA嵌合探针阵列及其使用方法

    公开(公告)号:US06469151B1

    公开(公告)日:2002-10-22

    申请号:US09881557

    申请日:2001-06-14

    IPC分类号: C07H2100

    CPC分类号: C12Q1/6862

    摘要: The invention provides methods, kits, and compositions for ligation of PNA-DNA chimeric probes and oligonucleotides when they are hybridized adjacently to template nucleic acids using ligases and ligation reagents. Structural requirements of the chimeras for ligation include 5 to 15 contiguous PNA monomer units, 2 or more contiguous nucleotides, and a 3′ hydroxyl or 5′ hydroxyl terminus. The chimera and/or oligonucleotide may be labelled with fluorescent dyes or other labels. The methods include, for example, oligonucleotide-ligation assays (OLA) and single nucleotide polymorphism detection.

    摘要翻译: 当使用连接酶和连接试剂将它们与模板核酸相互杂交时,本发明提供用于连接PNA-DNA嵌合探针和寡核苷酸的方法,试剂盒和组合物。 用于连接的嵌合体的结构要求包括5至15个连续的PNA单体单元,2个或更多个连续核苷酸,以及3'羟基或5'羟基末端。 嵌合体和/或寡核苷酸可以用荧光染料或其他标记物标记。 所述方法包括例如寡核苷酸连接测定(OLA)和单核苷酸多态性检测。

    Multipartite high-affinity nucleic acid probes
    39.
    发明授权
    Multipartite high-affinity nucleic acid probes 有权
    多部分高亲和力核酸探针

    公开(公告)号:US06451588B1

    公开(公告)日:2002-09-17

    申请号:US09610155

    申请日:2000-06-30

    IPC分类号: C12M134

    摘要: The invention provides a collection of probes useful for hybridizing to a target nucleic acid. The probes associate with each other, binding with high affinity to the target nucleic acid, to form three-way junctions and other complexes. At least one of the probes in each collection includes a nucleic acid analog. Methods using the probes in hybridization and as primers are also provided.

    摘要翻译: 本发明提供了可用于与靶核酸杂交的探针的集合。 探针相互结合,以高亲和力结合靶核酸,形成三向连接点和其他复合物。 每个集合中的至少一个探针包含核酸类似物。 还提供了在杂交和引物中使用探针的方法。

    Polymerase extension at 3′ terminus of PNA-DNA chimera
    40.
    发明授权
    Polymerase extension at 3′ terminus of PNA-DNA chimera 有权
    PNA-DNA嵌合体3'末端的聚合酶延伸

    公开(公告)号:US06316230B1

    公开(公告)日:2001-11-13

    申请号:US09373845

    申请日:1999-08-13

    IPC分类号: C12Q168

    摘要: The invention provides methods and a kit for primer extension of PNA-DNA chimera from template nucleic acids using polymerases, nucleotide 5′-triphosphates, and primer extension reagents. Structural requirements of the chimera for primer extension include 5 to 15 contiguous PNA monomer units, 3 or more contiguous nucleotides, and a 3′ hydroxyl terminus. The chimera and/or a nucleotide is labelled with fluorescent dyes or other labels. The methods include DNA sequencing, DNA fragment analysis, reverse transcription, mini-sequencing, chromosome labelling, amplification, and single nucleotide polymorphism (SNP) detection.

    摘要翻译: 本发明提供了使用聚合酶,核苷酸5'-三磷酸和引物延伸试剂从模板核酸引物延伸PNA-DNA嵌合体的方法和试剂盒。 用于引物延伸的嵌合体的结构要求包括5至15个连续的PNA单体单元,3个或更多个连续核苷酸和3'羟基末端。 嵌合体和/或核苷酸用荧光染料或其他标记物标记。 方法包括DNA测序,DNA片段分析,逆转录,微型测序,染色体标记,扩增和单核苷酸多态性(SNP)检测。