Method, system, and knowledge repository for identifying a secondary metabolite from a microorganism
    3.
    发明申请
    Method, system, and knowledge repository for identifying a secondary metabolite from a microorganism 审中-公开
    用于从微生物鉴定次生代谢物的方法,系统和知识库

    公开(公告)号:US20070061084A1

    公开(公告)日:2007-03-15

    申请号:US11262235

    申请日:2005-10-28

    IPC分类号: C12Q1/00 C12Q1/68 G06F19/00

    CPC分类号: C12Q1/02 G16B50/00

    摘要: Described are methods and systems for identifying a secondary metabolite synthesized by a target gene cluster within a microorganism. A putative or confirmed function is attributed to a gene within the gene cluster, and an extract from the microorganism is obtained which is suspected to contain the secondary metabolite synthesized by the gene cluster. The extract is then assessed for chemical, physical or biological properties, and the metabolite is identified and optionally isolated. Further, the invention provides a knowledge repository in which gene cluster information is linked to secondary metabolite production data. The invention further relates to a graphical user interface for accessing the knowledge repository, and a memory for storing data, having a data structure that is stored in the memory.

    摘要翻译: 描述了用于鉴定由微生物内的靶基因簇合成的次级代谢物的方法和系统。 推定或确认的功能归因于基因簇内的基因,并且获得了怀疑含有由基因簇合成的次级代谢物的微生物提取物。 然后评估提取物的化学,物理或生物学性质,并鉴定和任选分离代谢物。 此外,本发明提供了知识库,其中基因簇信息与次级代谢产生数据相关联。 本发明还涉及用于访问知识库的图形用户界面和用于存储数据的存储器,其具有存储在存储器中的数据结构。

    System, knowledge repository and computer-readable medium for identifying a secondary metabolite from a microorganism
    5.
    发明申请
    System, knowledge repository and computer-readable medium for identifying a secondary metabolite from a microorganism 审中-公开
    用于从微生物鉴定次级代谢物的系统,知识库和计算机可读介质

    公开(公告)号:US20080010025A1

    公开(公告)日:2008-01-10

    申请号:US11551137

    申请日:2006-10-19

    IPC分类号: G01N33/50

    CPC分类号: C12Q1/025

    摘要: The invention relates to a method and system for identifying a secondary metabolite synthesized by a target gene cluster within a microorganism. A putative or confirmed function is attributed to a gene within the gene cluster, and an extract from the microorganism is obtained which is suspected to contain the secondary metabolite synthesized by the gene cluster. The extract is then assessed for chemical, physical or biological properties, and the metabolite is identified and optionally isolated. Further, the invention provides a knowledge repository in which gene cluster information is linked to secondary metabolite production data. The invention further relates to a graphical user interface for accessing the knowledge repository, and a memory for storing data, having a data structure that is stored in the memory.

    摘要翻译: 本发明涉及鉴定由微生物内的靶基因簇合成的次级代谢物的方法和系统。 推定或确认的功能归因于基因簇内的基因,并且获得了怀疑含有由基因簇合成的次级代谢物的微生物提取物。 然后评估提取物的化学,物理或生物学性质,并鉴定和任选分离代谢物。 此外,本发明提供了知识库,其中基因簇信息与次级代谢产生数据相关联。 本发明还涉及用于访问知识库的图形用户界面和用于存储数据的存储器,其具有存储在存储器中的数据结构。

    Farnesyl dibenzodiazepinone, and processes for its production
    8.
    发明授权
    Farnesyl dibenzodiazepinone, and processes for its production 有权
    法呢基二苯并二氮杂酮及其制备方法

    公开(公告)号:US07101872B2

    公开(公告)日:2006-09-05

    申请号:US10762107

    申请日:2004-01-21

    IPC分类号: C07D243/10 A61K31/55

    摘要: This invention relates to a novel farnesylated dibenzodiazepinone, named ECO-04601, its pharmaceutically acceptable salts and derivatives, and to methods for obtaining such compounds. One method of obtaining the ECO-04601 compound is by cultivation of a novel strain of Micromonospora sp., 046-ECO11; another method involves expression of biosynthetic pathway genes in transformed host cells. The present invention further relates to Micromonospora sp. strain 046-ECO11, to the use of ECO-04601 and its pharmaceutically acceptable salts and derivatives as pharmaceuticals, in particular to their use as inhibitors of cancer cell growth, bacterial cell growth, mammalian lipoxygenase, and to pharmaceutical compositions comprising ECO-04601 or a pharmaceutically acceptable salt or derivative thereof. Finally, the invention relates to novel polynucleotide sequences and their encoded proteins, which are involved in the biosynthesis of ECO-04601.

    摘要翻译: 本发明涉及名为ECO-04601的新型法呢基化二苯并二氮杂酮,其药学上可接受的盐和衍生物,以及获得这些化合物的方法。 获得ECO-04601化合物的一种方法是通过培养一种新型的小单孢菌属菌株046-ECO11; 另一种方法涉及在转化的宿主细胞中表达生物合成途径基因。 本发明还涉及小单孢菌属 应用046-ECO11,使用ECO-04601及其药学上可接受的盐和衍生物作为药物,特别是其作为癌细胞生长抑制剂,细菌细胞生长,哺乳动物脂氧合酶的用途,以及包含ECO-04601或 其药学上可接受的盐或衍生物。 最后,本发明涉及参与ECO-04601的生物合成的新型多核苷酸序列及其编码的蛋白质。

    Farnesyl dibenzodiazepinone and processes for its production
    9.
    发明申请
    Farnesyl dibenzodiazepinone and processes for its production 失效
    法呢基二苯并二氮杂酮及其生产方法

    公开(公告)号:US20080199940A1

    公开(公告)日:2008-08-21

    申请号:US11511586

    申请日:2006-08-28

    IPC分类号: C12N1/20 C07H21/02 C12N15/00

    摘要: This invention relates to a novel farnesylated dibenzodiazepinone, named ECO-04601, its pharmaceutically acceptable salts and derivatives, and to methods for obtaining such compounds. One method of obtaining the ECO-04601 compound is by cultivation of a novel strain of Micromonospora sp., 046-ECO11; another method involves expression of biosynthetic pathway genes in transformed host cells. The present invention further relates to Micromonospora sp. strain 046-ECO11, to the use of ECO-04601 and its pharmaceutically acceptable salts and derivatives as pharmaceuticals, in particular to their use as inhibitors of cancer cell growth, bacterial cell growth, mammalian lipoxygenase, and to pharmaceutical compositions comprising ECO-04601 or a pharmaceutically acceptable salt or derivative thereof. Finally, the invention relates to novel polynucleotide sequences and their encoded proteins, which are involved in the biosynthesis of ECO-04601.

    摘要翻译: 本发明涉及名为ECO-04601的新型法呢基化二苯并二氮杂酮,其药学上可接受的盐和衍生物,以及获得这些化合物的方法。 获得ECO-04601化合物的一种方法是通过培养一种新型的小单孢菌属菌株046-ECO11; 另一种方法涉及在转化的宿主细胞中表达生物合成途径基因。 本发明还涉及小单孢菌属 应用046-ECO11,使用ECO-04601及其药学上可接受的盐和衍生物作为药物,特别是其作为癌细胞生长抑制剂,细菌细胞生长,哺乳动物脂氧合酶的用途,以及包含ECO-04601或 其药学上可接受的盐或衍生物。 最后,本发明涉及参与ECO-04601的生物合成的新型多核苷酸序列及其编码的蛋白质。

    Cyclic hexadepsipeptides, processes for their production and their use as pharmaceuticals
    10.
    发明授权
    Cyclic hexadepsipeptides, processes for their production and their use as pharmaceuticals 失效
    环十六肽,其制备方法及其作为药物的用途

    公开(公告)号:US08076287B2

    公开(公告)日:2011-12-13

    申请号:US12294213

    申请日:2007-03-28

    IPC分类号: A61K38/12

    摘要: The present invention provides cyclic hexadepsipeptides and their pharmaceutically acceptable salts, solvates and prodrugs, and methods for obtaining the compounds, by fermentation, optionally followed by post-biosynthesis chemical modification. The present invention further provides uses of cyclic hexadepsipeptides, and their pharmaceutically acceptable salts, solvates and prodrugs as pharmaceuticals, in particular to their use as antibacterial, antifungal or antineoplastic agents, and to pharmaceutical compositions comprising a cyclic hexadepsipeptide, or a pharmaceutically acceptable salt, solvate or prodrug thereof, together with a carrier.

    摘要翻译: 本发明提供环状十六肽及其药学上可接受的盐,溶剂合物和前药,以及通过发酵,任选地随后进行生物合成化学修饰来获得化合物的方法。 本发明进一步提供了环状十六肽及其药学上可接受的盐,溶剂合物和前药作为药物,特别是其作为抗细菌剂,抗真菌剂或抗肿瘤剂的用途的用途,以及包含环十六肽或其药学上可接受的盐, 溶剂化物或前药,以及载体。