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公开(公告)号:US20250066843A1
公开(公告)日:2025-02-27
申请号:US18728980
申请日:2023-02-06
Applicant: Becton, Dickinson and Company
Inventor: Jody Martin , Katherine Lazaruk , Tracy Campbell , Dennis Prosen , Adam Thomas Wright , Hye-Won Song
IPC: C12Q1/6851 , C12Q1/6804 , C12Q1/6834
Abstract: Disclosed herein include systems, methods, compositions, and kits for reducing non-specific noise-causing oligonucleotides in library preparations. Capture particles present in PCR reactions that are derived from partitions that did not contain a cell (e.g., noise capture particles) provide a significant source of non-specific nucleic acid and noise in single cell multiomics library preparations. In some embodiments of the methods provided herein, said noise capture particles are removed by a variety of approaches.
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公开(公告)号:US12157913B2
公开(公告)日:2024-12-03
申请号:US17336055
申请日:2021-06-01
Applicant: Becton, Dickinson and Company
Inventor: Katherine Lazaruk
IPC: C12Q1/6818 , C12Q1/6809
Abstract: Disclosed herein include systems, methods, compositions, and kits for 5′-based gene expression profiling. Some embodiments provide synthetic particles (e.g., beads) associated with a first plurality of oligonucleotide barcodes and a second plurality of oligonucleotide barcodes. In some embodiments, nucleic acid targets (e.g., mRNAs) are initially barcoded on the 3′ end with the first plurality of oligonucleotide barcodes and subsequently barcoded on the 5′ end following a template switching reaction and intermolecular hybridization with the first plurality of oligonucleotide barcodes and extension. Immune repertoire profiling methods are also provided in some embodiments.
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公开(公告)号:US12084712B2
公开(公告)日:2024-09-10
申请号:US16848241
申请日:2020-04-14
Applicant: BECTON, DICKINSON AND COMPANY
Inventor: Christina Chang , Christina Fan , Eleen Shum , Jody Martin , Nidhanjali Bansal , James Ghadiali , Katherine Lazaruk , Gretchen Yinbon Lam
IPC: C12Q1/6804 , C12Q1/6806 , C12Q1/6809 , C12Q1/6811 , C12Q1/6816 , C12Q1/6855 , C12Q1/6865 , C12Q1/6869 , C12Q1/6876 , G01N33/532 , B82Y5/00 , C12Q1/6834 , C12Q1/6837
CPC classification number: C12Q1/6804 , C12Q1/6806 , C12Q1/6809 , C12Q1/6811 , C12Q1/6816 , C12Q1/6855 , C12Q1/6865 , C12Q1/6869 , C12Q1/6876 , G01N33/532 , B82Y5/00 , C12Q1/6834 , C12Q1/6837 , C12Q2563/149 , C12Q2563/179 , C12Q2563/185 , C12Q2600/16 , G01N2458/10 , C12Q1/6869 , C12Q2525/179 , C12Q2563/131 , C12Q2563/179 , C12Q1/6869 , C12Q2563/131 , C12Q2563/179
Abstract: Disclosed herein include systems, methods, compositions, and kits for sample identification. A sample indexing composition can comprise, for example, a protein binding reagent associated with a sample indexing oligonucleotide. Different sample indexing compositions can include sample indexing oligonucleotides with different sequences. Sample origin of cells can be identified based on the sequences of the sample indexing oligonucleotides. Sample indexing oligonucleotides can be barcoded using barcoded and lengthened using daisy-chaining primers.
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公开(公告)号:US11661625B2
公开(公告)日:2023-05-30
申请号:US17320052
申请日:2021-05-13
Applicant: Becton, Dickinson and Company
Inventor: Devon Jensen , Katherine Lazaruk , Dennis Prosen , Ricelle A. Acob , Kai Liu
IPC: C12Q1/68 , C12Q1/6806 , C07K14/705 , C07K14/725 , C12Q1/6858
CPC classification number: C12Q1/6806 , C07K14/7051 , C07K14/70503 , C12Q1/6858
Abstract: Disclosed herein include systems, methods, compositions, and kits for immune repertoire profiling. There are provided, in some embodiments, primer panels enabling the determination of the nucleotide sequence of the complete variable region of nucleic acids encoding mouse B cell receptor (BCR) and T cell receptor (TCR) polypeptides. In some embodiments, the method comprises single cell transcriptomic analysis.
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公开(公告)号:US20220315988A1
公开(公告)日:2022-10-06
申请号:US17830897
申请日:2022-06-02
Applicant: Becton, Dickinson and Company
Inventor: Katherine Lazaruk , Eleen Shum , Christina Chang
IPC: C12Q1/6806 , C12Q1/6851 , C12Q1/6876
Abstract: Disclosed herein include systems, methods, compositions, and kits for PCR normalization. In some embodiments, after barcoding copies of a higher abundance target (e.g., a cDNA species), the barcoded copies are amplified using a pair of forward primers comprising one or more mismatches and a reverse primer. The amplified copies can be further linearly amplified using a forward primer comprising the sequence of one of the pair of forward primers, and a reverse primer.
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公开(公告)号:US20210214770A1
公开(公告)日:2021-07-15
申请号:US17147283
申请日:2021-01-12
Applicant: Becton, Dickinson and Company
Inventor: Dennis Prosen , Katherine Lazaruk
IPC: C12Q1/6806 , C12P19/34 , C12Q1/6816 , C12Q1/6874
Abstract: Disclosed herein include systems, methods, compositions, and kits for labeling nucleic acid targets. Some embodiments provide oligonucleotide barcodes comprising a cleavage region. The cleavage region can comprise one or more cleavage sites. In some embodiments, cleaving agents are capable of effectuating cleavage of a phosphodiester backbone of the cleavage region. The oligonucleotide barcode can be associated with a solid support. Methods of separating barcoded nucleic acid molecules from the solid support are also provided in some embodiments.
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公开(公告)号:US11739443B2
公开(公告)日:2023-08-29
申请号:US17531618
申请日:2021-11-19
Applicant: Becton, Dickinson and Company
Inventor: Cynthia Sakofsky , Katherine Lazaruk , Margaret Nakamoto , Devon Joseph Jensen
CPC classification number: C40B30/04 , C12N15/1065 , C12N15/1072 , C40B40/10 , C40B50/06
Abstract: Disclosed herein include systems, methods, compositions, and kits for determining the expression of highly expressed proteins and lowly expressed proteins. In some embodiments, primers allowing generation of separate libraries for abundant AbSeq protein profiling oligonucleotides and scarce AbSeq protein profiling oligonucleotides are provided.
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公开(公告)号:US11649497B2
公开(公告)日:2023-05-16
申请号:US17147272
申请日:2021-01-12
Applicant: Becton, Dickinson and Company
Inventor: Dennis Prosen , Katherine Lazaruk
IPC: C12Q1/6874 , C12Q1/6804
CPC classification number: C12Q1/6874 , C12Q1/6804
Abstract: Disclosed herein include systems, methods, compositions, and kits for determining expressions of proteins and genes simultaneously, and for sample indexing. The method can comprise extending a cellular component-binding reagent specific oligonucleotide hybridized to an oligonucleotide barcode to generate an extended cellular component-binding reagent specific oligonucleotide. The extended cellular component-binding reagent specific oligonucleotide can be separated from the oligonucleotide barcodes. The separated extended cellular component-binding reagent specific oligonucleotide can be amplified separately from barcoded cDNA.
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公开(公告)号:US11371076B2
公开(公告)日:2022-06-28
申请号:US16743898
申请日:2020-01-15
Applicant: Becton, Dickinson and Company
Inventor: Katherine Lazaruk , Eleen Shum , Christina Chang
IPC: C12P19/34 , C12Q1/6806 , C12Q1/6851 , C12Q1/6876
Abstract: Disclosed herein include systems, methods, compositions, and kits for PCR normalization. In some embodiments, after barcoding copies of a higher abundance target (e.g., a cDNA species), the barcoded copies are amplified using a pair of forward primers comprising one or more mismatches and a reverse primer. The amplified copies can be further linearly amplified using a forward primer comprising the sequence of one of the pair of forward primers, and a reverse primer.
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公开(公告)号:US20220162773A1
公开(公告)日:2022-05-26
申请号:US17531618
申请日:2021-11-19
Applicant: Becton, Dickinson and Company
Inventor: Cynthia Sakofsky , Katherine Lazaruk , Margaret Nakamoto , Devon Joseph Jensen
Abstract: Disclosed herein include systems, methods, compositions, and kits for determining the expression of highly expressed proteins and lowly expressed proteins. In some embodiments, primers allowing generation of separate libraries for abundant AbSeq protein profiling oligonucleotides and scarce AbSeq protein profiling oligonucleotides are provided.
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