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公开(公告)号:US10590453B2
公开(公告)日:2020-03-17
申请号:US15998679
申请日:2018-08-16
申请人: Lyle J. Arnold , Norman C. Nelson
发明人: Lyle J. Arnold , Norman C. Nelson
IPC分类号: C12P19/34 , C12Q1/6844
摘要: The present invention provides methods of amplifying a target nucleic acid utilizing a circularized template. Circularization may be achieved utilizing a bridging oligonucleotide or an inverter primer. The bridging oligonucleotide or inverted primer is extended forming a concatemeric amplicon that can then be used as a template to provide exponential amplification of the target nucleic acid.
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公开(公告)号:US10174352B2
公开(公告)日:2019-01-08
申请号:US14773362
申请日:2014-03-14
申请人: Lyle J. Arnold , Norman C. Nelson
发明人: Lyle J. Arnold , Norman C. Nelson
IPC分类号: C12Q1/68 , C12P19/34 , C12Q1/6853 , C12Q1/6865 , C07H21/02
摘要: The present invention provides methods for amplifying a nucleic acid from a sample containing a mixture of nucleic acids utilizing a solid support. Methods are provided utilizing user-defined primer oligonucleotides for directional amplification that assists in further manipulation of the target nucleic acid, such as sequencing. Methods are also provided utilizing blocker and displacer oligonucleotides for generating amplified target nucleic acids of defined length. One of these methods provides a first oligonucleotide and a second oligonucleotide affixed to a solid support or separate solid supports. The first oligonucleotide is blocked to prevent extension from the 3′-terminus and has a sequence complementary to a first portion of a target nucleic acid. The second oligonucleotide has a sequence that is identical to a second portion of the target nucleic acid. In this method, a sample is applied to the solid support and the target nucleic acid within the sample binds said first oligonucleotide. The solid support is then washed to remove unbound nucleic acids. A primer sequence containing a target binding region and a polymerase promoter sequence is then annealed to the bound target nucleic acid and extended producing a first duplex nucleic acid. The target sequence is then removed leaving a first nucleic acid that can now bind the second oligonucleotide. The second oligonucleotide is extended to produce a second duplex nucleic acid that contains a second nucleic acid. The second nucleic acid is then amplified by adding a polymerase.
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公开(公告)号:US10081825B2
公开(公告)日:2018-09-25
申请号:US14773363
申请日:2014-03-14
申请人: Lyle J. Arnold , Norman C. Nelson
发明人: Lyle J. Arnold , Norman C. Nelson
IPC分类号: C12Q1/68 , C12P19/34 , C12Q1/6844
CPC分类号: C12P19/34 , C12Q1/6844 , C12Q2531/119 , C12Q2531/125 , C12Q2537/162
摘要: The present invention provides methods of amplifying a target nucleic acid utilizing a circularized template. Circularization may be achieved utilizing a bridging oligonucleotide or an inverter primer. The bridging oligonucleotide or inverted primer is extended forming a concatemeric amplicon that can then be used as a template to provide exponential amplification of the target nucleic acid.
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公开(公告)号:US10072290B2
公开(公告)日:2018-09-11
申请号:US14773366
申请日:2014-03-15
申请人: Lyle J. Arnold , Norman C. Nelson
发明人: Lyle J. Arnold , Norman C. Nelson
IPC分类号: C12Q1/68 , C12Q1/6858 , C12Q1/6806 , C12Q1/6844
CPC分类号: C12Q1/6858 , C12Q1/6806 , C12Q1/6844 , C12Q2525/161 , C12Q2525/186 , C12Q2525/204 , C12Q2531/101
摘要: The present invention provides methods of amplifying a fragmented target nucleic acid containing short target nucleic acid fragments utilizing an assembler sequence to convert these short fragments into longer sequences enabling their identification and interrogation. This is particularly important when attempting to identify small genetic variations, such as SNVs, present in highly fragmented nucleic acid samples. Amplification is accomplished by hybridizing the short target nucleic acid sequences to the assembler sequence, where these short sequences serve as primers for extension. Since the fragmented target nucleic acids that contain SNVs are utilized as primers on the assembler sequence they are preserved during amplification and can be detected.
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公开(公告)号:US20140329282A1
公开(公告)日:2014-11-06
申请号:US14342764
申请日:2012-09-06
申请人: Norman C. Nelson , Jijumon Chelliserry , Steven T. Brentano , Dmitry Lyakhov , Matthew C. Friedenberg , Anne-Laure Shapiro
发明人: Norman C. Nelson , Jijumon Chelliserry , Steven T. Brentano , Dmitry Lyakhov , Matthew C. Friedenberg , Anne-Laure Shapiro
IPC分类号: C12P19/34
摘要: The invention provides compositions and methods for making closed nucleic acid structures in which one or both strands are continuous. The closed nucleic acid structures can be used as sequencing templates among other applications.
摘要翻译: 本发明提供用于制备其中一条或两条链是连续的封闭核酸结构的组合物和方法。 封闭的核酸结构可以用作其他应用中的测序模板。
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36.
公开(公告)号:US08480976B2
公开(公告)日:2013-07-09
申请号:US13181850
申请日:2011-07-13
申请人: Scott S. Breidenthal , Sara H. Fan , Richard S. Lee , Norman C. Nelson , Matthew J. Scott , Jason A. Taylor
发明人: Scott S. Breidenthal , Sara H. Fan , Richard S. Lee , Norman C. Nelson , Matthew J. Scott , Jason A. Taylor
IPC分类号: B01L3/00
CPC分类号: B01F11/00 , B01F3/1271 , B01F11/0045 , B01F11/0071 , B01F13/0059 , B01F15/00214 , B01F2215/0037 , B01L3/502 , B01L3/502715 , B01L3/50273 , B01L3/502761 , B01L7/52 , B01L7/525 , B01L2200/0621 , B01L2200/0647 , B01L2200/0673 , B01L2200/0689 , B01L2200/10 , B01L2200/14 , B01L2200/16 , B01L2300/0816 , B01L2300/087 , B01L2300/0887 , B01L2300/123 , B01L2300/1805 , B01L2300/1822 , B01L2300/1883 , B01L2400/0457 , B01L2400/0478 , B01L2400/0481 , B01L2400/0655 , B01L2400/0677 , C12N15/1006 , C12Q1/6806 , C12Q1/6844 , G01N1/44 , G01N21/01 , G01N21/6428 , G01N21/645 , G01N35/0098 , G01N2021/6419 , G01N2021/6421 , G01N2021/6432 , G01N2021/6439 , G01N2021/6463 , G01N2035/00544 , G01N2201/0627 , Y10T137/0391 , Y10T436/143333 , Y10T436/25 , Y10T436/255
摘要: A receptacle having a plurality of interconnected chambers arranged to permit multiple process steps or processes to be performed independently or simultaneously. The receptacles are manufactured to separate liquid from dried reagents and to maintain the stability of the dried reagents. An immiscible liquid, such as an oil, is included to control loading of process materials, facilitate mixing and reconstitution of dried reagents, limit evaporation, control heating of reaction materials, concentrate solid support materials to prevent clogging of fluid connections, provide minimum volumes for fluid transfers, and to prevent process materials from sticking to chamber surfaces. The receptacles can be adapted for use in systems having a processing instrument that includes an actuator system for selectively moving fluid substances between chambers and a detector. The actuator system can be arranged to concentrate an analyte present in a sample. The detector can be used to detect an optical signal emitted by the contents of the receptacle.
摘要翻译: 具有多个互连室的容器,其布置成允许独立地或同时地执行多个工艺步骤或工艺。 制造容器以将液体与干燥试剂分开并保持干燥试剂的稳定性。 包括不混溶的液体,如油,以控制加工材料的加载,促进干燥试剂的混合和重构,限制蒸发,控制反应材料的加热,浓缩固体支持材料以防止流体连接堵塞,为 流体转移,并防止工艺材料粘附到室表面。 插座可以适用于具有处理器具的系统,该处理器具包括用于选择性地移动腔室和检测器之间的流体物质的致动器系统。 致动器系统可以被布置成集中存在于样品中的分析物。 检测器可用于检测由容器的内容物发射的光信号。
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37.
公开(公告)号:US20120231456A1
公开(公告)日:2012-09-13
申请号:US13414195
申请日:2012-03-07
申请人: Scott S. Breidenthal , Sara H. Fan , Richard S. Lee , Norman C. Nelson , Matthew J. Scott , Jason A. Taylor
发明人: Scott S. Breidenthal , Sara H. Fan , Richard S. Lee , Norman C. Nelson , Matthew J. Scott , Jason A. Taylor
IPC分类号: G01N21/64
CPC分类号: B01F11/00 , B01F3/1271 , B01F11/0045 , B01F11/0071 , B01F13/0059 , B01F15/00214 , B01F2215/0037 , B01L3/502 , B01L3/502715 , B01L3/50273 , B01L3/502761 , B01L7/52 , B01L7/525 , B01L2200/0621 , B01L2200/0647 , B01L2200/0673 , B01L2200/0689 , B01L2200/10 , B01L2200/14 , B01L2200/16 , B01L2300/0816 , B01L2300/087 , B01L2300/0887 , B01L2300/123 , B01L2300/1805 , B01L2300/1822 , B01L2300/1883 , B01L2400/0457 , B01L2400/0478 , B01L2400/0481 , B01L2400/0655 , B01L2400/0677 , C12N15/1006 , C12Q1/6806 , C12Q1/6844 , G01N1/44 , G01N21/01 , G01N21/6428 , G01N21/645 , G01N35/0098 , G01N2021/6419 , G01N2021/6421 , G01N2021/6432 , G01N2021/6439 , G01N2021/6463 , G01N2035/00544 , G01N2201/0627 , Y10T137/0391 , Y10T436/143333 , Y10T436/25 , Y10T436/255
摘要: A receptacle having interconnected chambers arranged to permit multiple process steps to be performed independently or simultaneously. The receptacles are manufactured to separate liquid from dried reagents and to maintain the stability of the dried reagents. An immiscible liquid, such as an oil, is included to control loading of process materials, facilitate mixing and reconstitution of dried reagents, limit evaporation, control heating of reaction materials, concentrate solid support materials to prevent clogging of fluid connections, provide minimum volumes for fluid transfers, and to prevent process materials from sticking to chamber surfaces. The receptacles can be adapted for use in systems having a processing instrument that includes an actuator system for selectively moving fluid substances between chambers and a detector. The actuator system can be arranged to concentrate an analyte present in a sample. The detector can be used to detect an optical signal emitted by the contents of the receptacle.
摘要翻译: 具有互连室的容器,其布置成允许独立地或同时地执行多个工艺步骤。 制造容器以将液体与干燥试剂分开并保持干燥试剂的稳定性。 包括不混溶的液体,如油,以控制加工材料的加载,促进干燥试剂的混合和重构,限制蒸发,控制反应材料的加热,浓缩固体支持材料以防止流体连接堵塞,为 流体转移,并防止工艺材料粘附到室表面。 插座可以适用于具有处理器具的系统,该处理器具包括用于选择性地移动腔室和检测器之间的流体物质的致动器系统。 致动器系统可以被布置成集中存在于样品中的分析物。 检测器可用于检测由容器的内容物发射的光信号。
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公开(公告)号:US08052929B2
公开(公告)日:2011-11-08
申请号:US13078348
申请日:2011-04-01
申请人: Scott S. Breidenthal , Sara H. Fan , Richard S. Lee , Norman C. Nelson , Matthew J. Scott , Jason A. Taylor
发明人: Scott S. Breidenthal , Sara H. Fan , Richard S. Lee , Norman C. Nelson , Matthew J. Scott , Jason A. Taylor
IPC分类号: G01N15/06
CPC分类号: B01F11/00 , B01F3/1271 , B01F11/0045 , B01F11/0071 , B01F13/0059 , B01F15/00214 , B01F2215/0037 , B01L3/502 , B01L3/502715 , B01L3/50273 , B01L3/502761 , B01L7/52 , B01L7/525 , B01L2200/0621 , B01L2200/0647 , B01L2200/0673 , B01L2200/0689 , B01L2200/10 , B01L2200/14 , B01L2200/16 , B01L2300/0816 , B01L2300/087 , B01L2300/0887 , B01L2300/123 , B01L2300/1805 , B01L2300/1822 , B01L2300/1883 , B01L2400/0457 , B01L2400/0478 , B01L2400/0481 , B01L2400/0655 , B01L2400/0677 , C12N15/1006 , C12Q1/6806 , C12Q1/6844 , G01N1/44 , G01N21/01 , G01N21/6428 , G01N21/645 , G01N35/0098 , G01N2021/6419 , G01N2021/6421 , G01N2021/6432 , G01N2021/6439 , G01N2021/6463 , G01N2035/00544 , G01N2201/0627 , Y10T137/0391 , Y10T436/143333 , Y10T436/25 , Y10T436/255
摘要: A receptacle having a plurality of interconnected chambers arranged to permit multiple process steps or processes to be performed independently or simultaneously. The receptacles are manufactured to separate liquid from dried reagents and to maintain the stability of the dried reagents. An immiscible liquid, such as an oil, is included to control loading of process materials, facilitate mixing and reconstitution of dried reagents, limit evaporation, control heating of reaction materials, concentrate solid support materials to prevent clogging of fluid connections, provide minimum volumes for fluid transfers, and to prevent process materials from sticking to chamber surfaces. The receptacles can be adapted for use in systems having a processing instrument that includes an actuator system for selectively moving fluid substances between chambers and a detector.
摘要翻译: 具有多个互连室的容器,其布置成允许独立地或同时地执行多个工艺步骤或工艺。 制造容器以将液体与干燥试剂分开并保持干燥试剂的稳定性。 包括不混溶的液体,如油,以控制加工材料的加载,促进干燥试剂的混合和重构,限制蒸发,控制反应材料的加热,浓缩固体支持材料以防止流体连接堵塞,为 流体转移,并防止工艺材料粘附到室表面。 插座可以适用于具有处理器具的系统,该处理器具包括用于选择性地移动腔室和检测器之间的流体物质的致动器系统。
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公开(公告)号:US06180340B2
公开(公告)日:2001-01-30
申请号:US08962033
申请日:1997-10-31
申请人: Norman C. Nelson
发明人: Norman C. Nelson
IPC分类号: G01N33533
CPC分类号: G01N33/54306 , C12Q1/6816 , Y10S435/962 , Y10S435/968 , Y10S436/80 , Y10S436/814 , Y10S436/815 , Y10S436/817
摘要: A method and compositions for the detection and/or quantification of an analyte through the use of a plurality of labeled probes, with two or more said probes targeted to different regions of said analyte. In specific embodiments, the labels are separately distinguishable, and/or are present at different specific activities on the labels.
摘要翻译: 一种用于通过使用多个标记探针来检测和/或定量分析物的方法和组合物,其中两个或多个所述探针靶向所述分析物的不同区域。 在具体实施方案中,标签是分开区分的,和/或以不同的特定活性存在于标签上。
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40.
公开(公告)号:US20200002740A9
公开(公告)日:2020-01-02
申请号:US15998679
申请日:2018-08-16
申请人: Lyle J. Arnold , Norman C. Nelson
发明人: Lyle J. Arnold , Norman C. Nelson
IPC分类号: C12P19/34 , C12Q1/6844
摘要: The present invention provides methods of amplifying a target nucleic acid utilizing a circularized template. Circularization may be achieved utilizing a bridging oligonucleotide or an inverter primer. The bridging oligonucleotide or inverted primer is extended forming a concatemeric amplicon that can then be used as a template to provide exponential amplification of the target nucleic acid.
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