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公开(公告)号:US20240102003A1
公开(公告)日:2024-03-28
申请号:US18345856
申请日:2023-06-30
Inventor: Arvydas Lubys , Inga Cikotiene , Zana Kapustina , Arturas Berezniakovas , Justina Sulgaite , Simona Zeimyte , Mark Andersen , Michael Allen , Sihong Chen
IPC: C12N15/10 , C12N15/115 , C12Q1/6806
CPC classification number: C12N15/1065 , C12N15/115 , C12Q1/6806 , C12N2310/3517
Abstract: The present disclosure describes oligonucleotide-tethered nucleotides, methods of making them, and methods of using them. The oligonucleotide-tethered nucleotides comprise, in some embodiments, a nucleotide linked to an oligonucleotide of from about 3 to about 100 nucleotides in length. These oligonucleotide-tethered nucleotides can be used to label a plurality of different types of nucleic acids in a plurality of different situations with a known oligonucleotide, which can serve as a barcode in some embodiments. The resulting oligonucleotide-labeled nucleic acids oligo-nucleotides can be used in a variety of nucleic acid sequencing methods.
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公开(公告)号:US20240101980A1
公开(公告)日:2024-03-28
申请号:US18521466
申请日:2023-11-28
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Daniel MAZUR , Sihong CHEN , Peter VANDER HORN , Eileen TOZER , Guobin LUO , Joshua SHIRLEY , Kevin HEINEMANN
CPC classification number: C12N9/1252 , C12Q1/686 , C12Y207/07007
Abstract: The present disclosure provides compositions, methods, kits, systems and apparatus that are useful for nucleic acid polymerization. In particular, recombinant polymerases and biologically active fragments thereof are provided that allow for nucleic acid amplification. In some aspects, the disclosure provides recombinant polymerases that yield lower systematic error rates and/or improved accuracy, when used in sequencing by synthesis reactions as compared to a control polymerase. In one aspect, the disclosure relates to recombinant polymerases useful for nucleic acid sequencing, genotyping, copy number variation analysis, paired-end sequencing and other forms of genetic analysis. In another aspect, the recombinant polymerases are useful for the amplification of nucleic acid templates during PCR, emPCR, isothermal amplification, recombinase polymerase amplification, rolling circle amplification, strand displacement amplification and proximity ligation amplification. In some aspects, the disclosure relates to recombinant polymerases useful for the generation of nucleic acid libraries and/or nucleic acid templates.
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43.
公开(公告)号:US20240094110A1
公开(公告)日:2024-03-21
申请号:US18240441
申请日:2023-08-31
Applicant: Life Technologies Corporation
Inventor: Michael D Ward , Gregory Kaduchak , Dmitriy Strelkov
IPC: G01N15/14
CPC classification number: G01N15/1436 , G01N2015/0065
Abstract: Provided are systems and methods that allow for brightfield imaging in a flow cytometer, allowing for collection of fluorescence and high-quality image date. The disclosed technology also gives rise to an illumination pattern that allows a user to create different oblique or structured illumination profiles within a static system. With the disclosed approach, a user can illuminate a sample from a first direction (e.g., with laser illumination configured to give rise to one or more of fluorescence information and scattering information), collect scattering information from a second direction, collect fluorescence information from a third direction, and capture an image of the sample from a fourth direction. (Two or more of the foregoing can be accomplished simultaneously.) Also as described elsewhere herein, an illumination used to illuminate the sample for visual image capture can be communicated to the same through a lens that also collects fluorescence from the sample.
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公开(公告)号:US20240067939A1
公开(公告)日:2024-02-29
申请号:US18221099
申请日:2023-07-12
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Chieh-Yuan LI , David RUFF , Shiaw-Min CHEN , Jennifer O'NEIL , Rachel KASINSKAS , Jonathan ROTHBERG , Bin LI , Kai Qin LAO
IPC: C12N9/12 , C12Q1/6844 , C12Q1/6853 , C12Q1/6855 , C12Q1/686
CPC classification number: C12N9/1252 , C12Q1/6846 , C12Q1/6853 , C12Q1/6855 , C12Q1/686 , C12Q1/6874
Abstract: The present disclosure provides methods, compositions, kits and systems for nucleic acid amplification. In some embodiments, nucleic acid amplification methods include subjecting the nucleic acid to be amplified to partially denaturing conditions. In some embodiments, nucleic acid amplification methods include amplifying without fully denaturing the nucleic acid that is amplified. In some embodiments, the nucleic acid amplification method employs an enzyme that catalyzes homologous recombination and a polymerase. In some embodiments, methods for nucleic acid amplification can be conducted in a single reaction vessel and/or in a single continuous liquid phase of a reaction mixture, without need for compartmentalization of the reaction mixture or immobilization of reaction components. In some embodiments, methods for nucleic acid amplification comprise amplifying at least one polynucleotide onto a surface under isothermal amplification conditions, optionally in the presence of a polymer which can include a sieving agent and/or a diffusion-reducing agent.
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公开(公告)号:US11890557B2
公开(公告)日:2024-02-06
申请号:US17740710
申请日:2022-05-10
Applicant: Life Technologies Corporation
Inventor: Charles R. Rhodes
IPC: B01D29/27 , C12M1/12 , C12M1/00 , C12M1/26 , B01D35/027
CPC classification number: B01D29/27 , C12M23/14 , C12M23/28 , C12M25/16 , C12M29/04 , C12M33/14 , C12M47/02 , B01D35/027
Abstract: A filter bag assembly includes: a flexible first sheet; a flexible second sheet overlying and secured to the first sheet so that a compartment is formed therebetween; a porous filter sheet disposed between the first sheet and the second sheet so as to divide the compartment into a first compartment and a second compartment; a first port secured to the second sheet so as to communicate directly with the first compartment; and a second port secured to the second sheet so as to communicate directly with the second compartment, the second port being spaced apart from the first port. The porous filter sheet is disposed so that fluid entering the first compartment through the first port must pass through the filter sheet before entering the second compartment or exiting through the second port.
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公开(公告)号:US11879156B2
公开(公告)日:2024-01-23
申请号:US17818869
申请日:2022-08-10
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Phil Waggoner , James A. Ball , Wolfgang Hinz , Michael L. Minto , Scott Parker , David M. Cox , Alexander Mastroianni , Jeremy Gray , Marc Glazer , Kimberly Gorrell
IPC: G01N27/414 , C12Q1/6869
CPC classification number: C12Q1/6869 , G01N27/4145 , C12Q1/6869 , C12Q2527/119 , C12Q2527/125 , C12Q2565/607
Abstract: A sensor apparatus includes a substrate, a semiconductor device disposed over the substrate, the semiconductor device having a surface electrode structure, and a saccharide coating formed over the surface electrode structure. The saccharide coating can be removed prior to use. The semiconductor device can further include a well and optionally a bead disposed in the well.
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公开(公告)号:US20240021272A1
公开(公告)日:2024-01-18
申请号:US18330737
申请日:2023-06-07
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Fiona HYLAND , Eric TSUNG , Vasisht TADIGOTLA , Zheng ZHANG , Dumitru BRINZA , Onur SAKARYA , Xing XU
Abstract: Systems and method for determining variants can receive mapped reads, and call variants. In embodiments, flow space information for the reads can be aligned to a flow space representation of a corresponding portion of the reference. Reads spanning a position with a potential variant can be grouped and a score can be calculated for the variant. Based on the scores, a list of probable variants can be provided. In various embodiments, low frequency variants can be identified where multiple potential variants are present at a position.
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公开(公告)号:US11866740B2
公开(公告)日:2024-01-09
申请号:US17302621
申请日:2021-05-07
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Daniel Mazur , Peter B. Vander Horn , Eileen Tozer , Sihong Chen , Guobin Luo , Joshua Shirley , Kevin Heinemann
CPC classification number: C12N9/1252 , C12Q1/686 , C12Y207/07007 , C12Q1/686 , C12Q2521/101
Abstract: The present disclosure provides compositions, methods, kits, systems and apparatus that are useful for nucleic acid polymerization. In particular, recombinant polymerases and biologically active fragments thereof are provided that allow for nucleic acid amplification. In some aspects, the disclosure provides recombinant polymerases that yield lower systematic error rates and/or improved accuracy, when used in sequencing by synthesis reactions as compared to a control polymerase. In one aspect, the disclosure relates to recombinant polymerases useful for nucleic acid sequencing, genotyping, copy number variation analysis, paired-end sequencing and other forms of genetic analysis. In another aspect, the recombinant polymerases are useful for the amplification of nucleic acid templates during PCR, emPCR, isothermal amplification, recombinase polymerase amplification, rolling circle amplification, strand displacement amplification and proximity ligation amplification. In some aspects, the disclosure relates to recombinant polymerases useful for the generation of nucleic acid libraries and/or nucleic acid templates.
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公开(公告)号:US11865475B2
公开(公告)日:2024-01-09
申请号:US17521445
申请日:2021-11-08
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Scott P. Collins , Christopher D. Brau , Nephi D. Jones
CPC classification number: B01D11/0423 , B01D11/043 , B01D11/0449 , B01D11/0457 , B01F31/56 , B01F31/60 , B01F33/80 , G01N1/34 , G01N2001/4061
Abstract: A sample purification system includes a mixing zone; a settling zone in fluid communication with the mixing zone; a mixer element disposed in the mixing zone, the mixer element being configured to mix immiscible liquids to form a mixture; and a first acoustic wave settler configured to emit an acoustic wave into the mixture.
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公开(公告)号:US11860122B2
公开(公告)日:2024-01-02
申请号:US18098060
申请日:2023-01-17
Applicant: Life Technologies Corporation
Inventor: Shaohong Wang
IPC: G01J3/44 , G01N27/447 , G01J3/02 , G01J3/18
CPC classification number: G01N27/44721 , G01J3/0208 , G01J3/0218 , G01J3/0289 , G01J3/0294 , G01J3/18 , G01J3/4406 , G01N27/44791
Abstract: A system for separating biological molecules includes a plurality of capillaries, a capillary mount, a plurality of optical fibers, a fiber mount, an optical detector, and a motion stage. The plurality of capillaries are configured to separate biological molecules in a sample. Each capillary comprising a detection portion configured to pass electromagnetic radiation into the capillary. The plurality of capillaries are coupled to the capillary mount such that the detection portions are fixedly located relative to one another. Each optical fiber includes a receiving end to receive emissions. The optical fibers are coupled to the fiber mount such that the receiving ends of the optical fibers are fixedly located relative to one another. The optical detector is configured to produce an alignment signal. The motion stage is configured to align the receiving ends of the optical fibers to the detection portions based on values of the alignment signal.
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